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Running LINCS pipeline on PSP for: LINCS_GCP_Plate17_annotated_minimized_2018-05-07_14-10-50

GCP

Job Status

Created: 2019-08-16 15:59:21
Modified: 2020-06-01 17:07:59
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Running LINCS pipeline on PSP for: LINCS_GCP_Plate17_annotated_minimized_2018-05-07_14-10-50
File Path: /data/labkey/files/LINCS/Publications/Touchstone_2/GCP/@files/LincsPSP_LINCS_GCP_Plate17_annotated_minimized_2018-05-07_14-10-50_2019-08-16_15-59-21.log
Files: LincsPSP_LINCS_GCP_Plate17_annotated_minimized_2018-05-07_14-10-50_2019-08-16_15-59-21.log
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Log File


16 Aug 2019 15:59:21,259 INFO : Running LINCS pipeline on PSP for:  LINCS_GCP_Plate17_annotated_minimized_2018-05-07_14-10-50
16 Aug 2019 15:59:21,259 INFO : =======================================
16 Aug 2019 15:59:55,206 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
16 Aug 2019 15:59:55,207 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate17_annotated_minimized_2018-05-07_14-10-50
16 Aug 2019 15:59:55,207 INFO : Submitting job for runId: 69059, name: LINCS_GCP_Plate17_annotated_minimized_2018-05-07_14-10-50
16 Aug 2019 15:59:55,210 INFO : Looking for existing job with name LINCS_GCP_Plate17_annotated_minimized_2018-05-07_14-10-50
16 Aug 2019 15:59:55,322 INFO : Job with name LINCS_GCP_Plate17_annotated_minimized_2018-05-07_14-10-50exists.
16 Aug 2019 15:59:55,322 INFO : Looking for existing job with name LINCS_GCP_Plate17_annotated_minimized_2018-05-07_14-10-50_2
16 Aug 2019 15:59:55,433 INFO : PSP job name: LINCS_GCP_Plate17_annotated_minimized_2018-05-07_14-10-50_2
16 Aug 2019 15:59:55,433 INFO : Sending JSON:
16 Aug 2019 15:59:55,434 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP/%40files/GCT/LINCS_GCP_Plate17_annotated_minimized_2018-05-07_14-10-50_LVL4.gct"
  }},
  "assay": "GCP",
  "name": "LINCS_GCP_Plate17_annotated_minimized_2018-05-07_14-10-50_2",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP/%40files/GCT/LINCS_GCP_Plate17_annotated_minimized_2018-05-07_14-10-50.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS/Publications/Touchstone_2/GCP/runGCTReportApi.view?runId=69059&remote=true&reportName=GCT%20File%20GCP"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP/%40files/GCT/LINCS_GCP_Plate17_annotated_minimized_2018-05-07_14-10-50_LVL3.gct"
  }}
}
16 Aug 2019 15:59:55,434 INFO : Sending POST request to https://api.clue.io/api/psp
16 Aug 2019 15:59:55,743 INFO : Response code - 200
16 Aug 2019 15:59:55,743 INFO : Response from server: {"name":"LINCS_GCP_Plate17_annotated_minimized_2018-05-07_14-10-50_2","assay":"GCP","status":"Waiting_To_Download","id":"5d57356b544166e8be585651","created":"2019-08-16T22:59:55.504Z","last_modified":"2019-08-16T22:59:55.504Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/Publications/Touchstone_2/GCP/runGCTReportApi.view?runId=69059&remote=true&reportName=GCT%20File%20GCP"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP/%40files/GCT/LINCS_GCP_Plate17_annotated_minimized_2018-05-07_14-10-50_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP/%40files/GCT/LINCS_GCP_Plate17_annotated_minimized_2018-05-07_14-10-50_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP/%40files/GCT/LINCS_GCP_Plate17_annotated_minimized_2018-05-07_14-10-50.cfg"}}}
16 Aug 2019 15:59:55,744 INFO : Sent POST request to https://api.clue.io/api/psp
16 Aug 2019 15:59:55,746 INFO : Checking status of job 5d57356b544166e8be585651
16 Aug 2019 15:59:55,869 INFO : Status: Waiting_To_Download
16 Aug 2019 16:00:15,870 INFO : Checking status of job 5d57356b544166e8be585651
16 Aug 2019 16:00:16,130 INFO : Status: created LVL 3 GCT
16 Aug 2019 16:00:36,131 INFO : Checking status of job 5d57356b544166e8be585651
16 Aug 2019 16:00:36,444 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
16 Aug 2019 16:00:36,445 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
16 Aug 2019 16:00:36,445 INFO : Finished running LINCS PSP pipeline.
16 Aug 2019 16:00:36,445 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'