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Running LINCS pipeline on PSP for: LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29

GCP

Job Status

Created: 2019-08-16 15:54:02
Modified: 2020-06-01 17:07:59
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Running LINCS pipeline on PSP for: LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29
File Path: /data/labkey/files/LINCS/Publications/Touchstone_2/GCP/@files/LincsPSP_LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29_2019-08-16_15-54-01.log
Files: LincsPSP_LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29_2019-08-16_15-54-01.log
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Log File


16 Aug 2019 15:54:02,307 INFO : Running LINCS pipeline on PSP for:  LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29
16 Aug 2019 15:54:02,307 INFO : =======================================
16 Aug 2019 15:54:03,025 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
16 Aug 2019 15:54:03,026 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29
16 Aug 2019 15:54:03,026 INFO : Submitting job for runId: 69057, name: LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29
16 Aug 2019 15:54:03,029 INFO : Looking for existing job with name LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29
16 Aug 2019 15:54:03,385 INFO : Job with name LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29exists.
16 Aug 2019 15:54:03,385 INFO : Looking for existing job with name LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29_2
16 Aug 2019 15:54:03,498 INFO : PSP job name: LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29_2
16 Aug 2019 15:54:03,499 INFO : Sending JSON:
16 Aug 2019 15:54:03,499 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP/%40files/GCT/LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29_LVL4.gct"
  }},
  "assay": "GCP",
  "name": "LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29_2",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP/%40files/GCT/LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS/Publications/Touchstone_2/GCP/runGCTReportApi.view?runId=69057&remote=true&reportName=GCT%20File%20GCP"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP/%40files/GCT/LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29_LVL3.gct"
  }}
}
16 Aug 2019 15:54:03,500 INFO : Sending POST request to https://api.clue.io/api/psp
16 Aug 2019 15:54:03,752 INFO : Response code - 200
16 Aug 2019 15:54:03,752 INFO : Response from server: {"name":"LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29_2","assay":"GCP","status":"Waiting_To_Download","id":"5d57340b544166e8be58564f","created":"2019-08-16T22:54:03.568Z","last_modified":"2019-08-16T22:54:03.568Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/Publications/Touchstone_2/GCP/runGCTReportApi.view?runId=69057&remote=true&reportName=GCT%20File%20GCP"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP/%40files/GCT/LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP/%40files/GCT/LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP/%40files/GCT/LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29.cfg"}}}
16 Aug 2019 15:54:03,753 INFO : Sent POST request to https://api.clue.io/api/psp
16 Aug 2019 15:54:03,757 INFO : Checking status of job 5d57340b544166e8be58564f
16 Aug 2019 15:54:03,871 INFO : Status: Waiting_To_Download
16 Aug 2019 15:54:23,872 INFO : Checking status of job 5d57340b544166e8be58564f
16 Aug 2019 15:54:24,184 INFO : Status: created LVL2 GCT
16 Aug 2019 15:54:44,185 INFO : Checking status of job 5d57340b544166e8be58564f
16 Aug 2019 15:54:44,447 INFO : Status: created LVL2 GCT
16 Aug 2019 15:55:04,448 INFO : Checking status of job 5d57340b544166e8be58564f
16 Aug 2019 15:55:04,743 INFO : Status: created LVL2 GCT
16 Aug 2019 15:55:24,743 INFO : Checking status of job 5d57340b544166e8be58564f
16 Aug 2019 15:55:25,059 INFO : Status: created LVL2 GCT
16 Aug 2019 15:55:45,060 INFO : Checking status of job 5d57340b544166e8be58564f
16 Aug 2019 15:55:45,317 INFO : Status: created LVL2 GCT
16 Aug 2019 15:56:05,318 INFO : Checking status of job 5d57340b544166e8be58564f
16 Aug 2019 15:56:05,573 INFO : Status: created LVL2 GCT
16 Aug 2019 15:56:25,574 INFO : Checking status of job 5d57340b544166e8be58564f
16 Aug 2019 15:56:25,827 INFO : Status: created LVL2 GCT
16 Aug 2019 15:56:45,828 INFO : Checking status of job 5d57340b544166e8be58564f
16 Aug 2019 15:56:46,108 INFO : Status: created LVL2 GCT
16 Aug 2019 15:57:06,109 INFO : Checking status of job 5d57340b544166e8be58564f
16 Aug 2019 15:57:06,363 INFO : Status: created LVL 3 GCT
16 Aug 2019 15:57:26,364 INFO : Checking status of job 5d57340b544166e8be58564f
16 Aug 2019 15:57:26,616 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
16 Aug 2019 15:57:26,617 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
16 Aug 2019 15:57:26,617 INFO : Finished running LINCS PSP pipeline.
16 Aug 2019 15:57:26,618 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'