Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03

P100

Job Status

Created: 2020-06-29 15:20:44
Modified: 2020-06-29 15:48:32
Email: karen@broadinstitute.org
Status: COMPLETE
Info:
Description: Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03
File Path: /data/labkey/files/LINCS/P100/@files/LincsPSP_LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03_2020-06-29_15-20-44.log
Files: LincsPSP_LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03_2020-06-29_15-20-44.log

Log File


29 Jun 2020 15:20:44,923 INFO : Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03
29 Jun 2020 15:20:44,924 INFO : =======================================
29 Jun 2020 15:20:45,184 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
29 Jun 2020 15:20:45,185 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03
29 Jun 2020 15:20:45,186 INFO : Submitting job for runId: 89962, name: LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03
29 Jun 2020 15:20:45,189 INFO : Looking for existing job with name LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03
29 Jun 2020 15:20:45,579 INFO : PSP job name: LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03
29 Jun 2020 15:20:45,580 INFO : Sending JSON:
29 Jun 2020 15:20:45,581 INFO : { "level 4": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03_LVL4.gct" }}, "assay": "P100", "name": "LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03", "config": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03.cfg" }}, "level 2": {"panorama": { "method": "GET", "url": "https://panoramaweb.org/LINCS/P100/lincs-runGCTReportApi.view?runId=89962&remote=true&reportName=GCT%20File%20P100" }}, "level 3": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03_LVL3.gct" }} }
29 Jun 2020 15:20:45,583 INFO : Sending POST request to https://api.clue.io/api/psp
29 Jun 2020 15:20:45,778 INFO : Response code - 200
29 Jun 2020 15:20:45,779 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03","assay":"P100","status":"Waiting_To_Download","id":"5efa693df247240017110e8e","created":"2020-06-29T22:20:45.658Z","last_modified":"2020-06-29T22:20:45.658Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/LINCS/P100/lincs-runGCTReportApi.view?runId=89962&remote=true&reportName=GCT%20File%20P100"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03.cfg"}}}
29 Jun 2020 15:20:45,780 INFO : Sent POST request to https://api.clue.io/api/psp
29 Jun 2020 15:20:45,783 INFO : Checking status of job 5efa693df247240017110e8e
29 Jun 2020 15:20:45,911 INFO : Status: Waiting_To_Download
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29 Jun 2020 15:44:08,502 INFO : Status: created LVL2 GCT
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29 Jun 2020 15:48:32,208 INFO : Checking status of job 5efa693df247240017110e8e
29 Jun 2020 15:48:32,494 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
29 Jun 2020 15:48:32,495 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
29 Jun 2020 15:48:32,496 INFO : Finished running LINCS PSP pipeline.
29 Jun 2020 15:48:32,497 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'