Re-running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate96_annotated_minimized_2020-06-11_19-02-30

P100

Job Status

Created: 2020-06-11 19:32:45
Modified: 2020-06-11 19:39:52
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Re-running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate96_annotated_minimized_2020-06-11_19-02-30
File Path: /data/labkey/files/LINCS/P100/@files/LincsPSP_rerun_LINCS_P100_DIA_Plate96_annotated_minimized_2020-06-11_19-02-30_2020-06-11_19-32-45.log
Files: LincsPSP_rerun_LINCS_P100_DIA_Plate96_annotated_minimized_2020-06-11_19-02-30_2020-06-11_19-32-45.log

Log File


11 Jun 2020 19:32:45,186 INFO : Re-running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate96_annotated_minimized_2020-06-11_19-02-30
11 Jun 2020 19:32:45,205 INFO : =======================================
11 Jun 2020 19:32:45,485 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
11 Jun 2020 19:32:45,487 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate96_annotated_minimized_2020-06-11_19-02-30
11 Jun 2020 19:32:45,488 INFO : Resubmitting job for runId: 88924, name: LINCS_P100_DIA_Plate96_annotated_minimized_2020-06-11_19-02-30
11 Jun 2020 19:32:45,489 INFO : Old job details:
11 Jun 2020 19:32:45,490 INFO : Id: 310
11 Jun 2020 19:32:45,491 INFO : Pipeline job Id: 88556
11 Jun 2020 19:32:45,492 INFO : Run Id: 88924
11 Jun 2020 19:32:45,493 INFO : PSP Job Id: null
11 Jun 2020 19:32:45,494 INFO : PSP Job name: null
11 Jun 2020 19:32:45,495 INFO : PSP Job status: ERROR
11 Jun 2020 19:32:45,496 INFO : JSON: null
11 Jun 2020 19:32:45,497 INFO : Resubmitting...
11 Jun 2020 19:32:45,501 INFO : Looking for existing job with name LINCS_P100_DIA_Plate96_annotated_minimized_2020-06-11_19-02-30
11 Jun 2020 19:32:45,917 INFO : PSP job name: LINCS_P100_DIA_Plate96_annotated_minimized_2020-06-11_19-02-30
11 Jun 2020 19:32:45,920 INFO : Sending JSON:
11 Jun 2020 19:32:45,921 INFO : { "level 4": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate96_annotated_minimized_2020-06-11_19-02-30_LVL4.gct" }}, "assay": "P100", "name": "LINCS_P100_DIA_Plate96_annotated_minimized_2020-06-11_19-02-30", "config": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate96_annotated_minimized_2020-06-11_19-02-30.cfg" }}, "level 2": {"panorama": { "method": "GET", "url": "https://panoramaweb.org/LINCS/P100/lincs-runGCTReportApi.view?runId=88924&remote=true&reportName=GCT%20File%20P100" }}, "level 3": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate96_annotated_minimized_2020-06-11_19-02-30_LVL3.gct" }} }
11 Jun 2020 19:32:45,922 INFO : Sending POST request to https://api.clue.io/api/psp
11 Jun 2020 19:32:46,200 INFO : Response code - 200
11 Jun 2020 19:32:46,201 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate96_annotated_minimized_2020-06-11_19-02-30","assay":"P100","status":"Waiting_To_Download","id":"5ee2e94d9dec7d0017aef7f3","created":"2020-06-12T02:32:45.997Z","last_modified":"2020-06-12T02:32:45.997Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/LINCS/P100/lincs-runGCTReportApi.view?runId=88924&remote=true&reportName=GCT%20File%20P100"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate96_annotated_minimized_2020-06-11_19-02-30_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate96_annotated_minimized_2020-06-11_19-02-30_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate96_annotated_minimized_2020-06-11_19-02-30.cfg"}}}
11 Jun 2020 19:32:46,206 INFO : Sent POST request to https://api.clue.io/api/psp
11 Jun 2020 19:32:46,222 INFO : Checking status of job 5ee2e94d9dec7d0017aef7f3
11 Jun 2020 19:32:46,355 INFO : Status: Waiting_To_Download
11 Jun 2020 19:33:06,356 INFO : Checking status of job 5ee2e94d9dec7d0017aef7f3
11 Jun 2020 19:33:06,642 INFO : Status: Waiting_To_Download
11 Jun 2020 19:33:26,644 INFO : Checking status of job 5ee2e94d9dec7d0017aef7f3
11 Jun 2020 19:33:26,929 INFO : Status: Waiting_To_Download
11 Jun 2020 19:33:46,930 INFO : Checking status of job 5ee2e94d9dec7d0017aef7f3
11 Jun 2020 19:33:47,210 INFO : Status: Waiting_To_Download
11 Jun 2020 19:34:07,211 INFO : Checking status of job 5ee2e94d9dec7d0017aef7f3
11 Jun 2020 19:34:07,575 INFO : Status: Waiting_To_Download
11 Jun 2020 19:34:27,577 INFO : Checking status of job 5ee2e94d9dec7d0017aef7f3
11 Jun 2020 19:34:27,984 INFO : Status: Waiting_To_Download
11 Jun 2020 19:34:47,986 INFO : Checking status of job 5ee2e94d9dec7d0017aef7f3
11 Jun 2020 19:34:48,264 INFO : Status: Waiting_To_Download
11 Jun 2020 19:35:08,266 INFO : Checking status of job 5ee2e94d9dec7d0017aef7f3
11 Jun 2020 19:35:08,558 INFO : Status: created LVL2 GCT
11 Jun 2020 19:35:28,560 INFO : Checking status of job 5ee2e94d9dec7d0017aef7f3
11 Jun 2020 19:35:28,939 INFO : Status: created LVL2 GCT
11 Jun 2020 19:35:48,941 INFO : Checking status of job 5ee2e94d9dec7d0017aef7f3
11 Jun 2020 19:35:49,231 INFO : Status: created LVL2 GCT
11 Jun 2020 19:36:09,233 INFO : Checking status of job 5ee2e94d9dec7d0017aef7f3
11 Jun 2020 19:36:09,526 INFO : Status: created LVL2 GCT
11 Jun 2020 19:36:29,527 INFO : Checking status of job 5ee2e94d9dec7d0017aef7f3
11 Jun 2020 19:36:29,819 INFO : Status: created LVL2 GCT
11 Jun 2020 19:36:49,822 INFO : Checking status of job 5ee2e94d9dec7d0017aef7f3
11 Jun 2020 19:36:50,109 INFO : Status: created LVL2 GCT
11 Jun 2020 19:37:10,110 INFO : Checking status of job 5ee2e94d9dec7d0017aef7f3
11 Jun 2020 19:37:10,404 INFO : Status: created LVL2 GCT
11 Jun 2020 19:37:30,405 INFO : Checking status of job 5ee2e94d9dec7d0017aef7f3
11 Jun 2020 19:37:30,691 INFO : Status: created LVL2 GCT
11 Jun 2020 19:37:50,693 INFO : Checking status of job 5ee2e94d9dec7d0017aef7f3
11 Jun 2020 19:37:51,056 INFO : Status: created LVL2 GCT
11 Jun 2020 19:38:11,058 INFO : Checking status of job 5ee2e94d9dec7d0017aef7f3
11 Jun 2020 19:38:11,442 INFO : Status: created LVL2 GCT
11 Jun 2020 19:38:31,443 INFO : Checking status of job 5ee2e94d9dec7d0017aef7f3
11 Jun 2020 19:38:31,736 INFO : Status: created LVL2 GCT
11 Jun 2020 19:38:51,739 INFO : Checking status of job 5ee2e94d9dec7d0017aef7f3
11 Jun 2020 19:38:52,029 INFO : Status: created LVL2 GCT
11 Jun 2020 19:39:12,031 INFO : Checking status of job 5ee2e94d9dec7d0017aef7f3
11 Jun 2020 19:39:12,320 INFO : Status: created LVL2 GCT
11 Jun 2020 19:39:32,321 INFO : Checking status of job 5ee2e94d9dec7d0017aef7f3
11 Jun 2020 19:39:32,612 INFO : Status: created LVL 3 GCT
11 Jun 2020 19:39:52,614 INFO : Checking status of job 5ee2e94d9dec7d0017aef7f3
11 Jun 2020 19:39:52,905 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
11 Jun 2020 19:39:52,906 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
11 Jun 2020 19:39:52,907 INFO : Finished running LINCS PSP pipeline.
11 Jun 2020 19:39:52,908 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'