Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate29_annotated_minimized_2020-05-18_18-50-11

P100

Job Status

Created: 2020-05-18 15:59:16
Modified: 2020-06-01 16:07:27
Email: karen@broadinstitute.org
Status: COMPLETE
Info:
Description: Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate29_annotated_minimized_2020-05-18_18-50-11
File Path: /data/labkey/files/LINCS/P100/@files/LincsPSP_LINCS_P100_DIA_Plate29_annotated_minimized_2020-05-18_18-50-11_2020-05-18_15-59-15.log
Files: LincsPSP_LINCS_P100_DIA_Plate29_annotated_minimized_2020-05-18_18-50-11_2020-05-18_15-59-15.log

Log File


18 May 2020 15:59:15,980 INFO : Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate29_annotated_minimized_2020-05-18_18-50-11
18 May 2020 15:59:15,980 INFO : =======================================
18 May 2020 15:59:17,145 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
18 May 2020 15:59:17,145 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate29_annotated_minimized_2020-05-18_18-50-11
18 May 2020 15:59:17,146 INFO : Submitting job for runId: 87662, name: LINCS_P100_DIA_Plate29_annotated_minimized_2020-05-18_18-50-11
18 May 2020 15:59:17,148 INFO : Looking for existing job with name LINCS_P100_DIA_Plate29_annotated_minimized_2020-05-18_18-50-11
18 May 2020 15:59:17,533 INFO : PSP job name: LINCS_P100_DIA_Plate29_annotated_minimized_2020-05-18_18-50-11
18 May 2020 15:59:17,534 INFO : Sending JSON:
18 May 2020 15:59:17,534 INFO : { "level 4": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate29_annotated_minimized_2020-05-18_18-50-11_LVL4.gct" }}, "assay": "P100", "name": "LINCS_P100_DIA_Plate29_annotated_minimized_2020-05-18_18-50-11", "config": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate29_annotated_minimized_2020-05-18_18-50-11.cfg" }}, "level 2": {"panorama": { "method": "GET", "url": "https://panoramaweb.org/LINCS/P100/lincs-runGCTReportApi.view?runId=87662&remote=true&reportName=GCT%20File%20P100" }}, "level 3": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate29_annotated_minimized_2020-05-18_18-50-11_LVL3.gct" }} }
18 May 2020 15:59:17,534 INFO : Sending POST request to https://api.clue.io/api/psp
18 May 2020 15:59:17,803 INFO : Response code - 200
18 May 2020 15:59:17,803 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate29_annotated_minimized_2020-05-18_18-50-11","assay":"P100","status":"Waiting_To_Download","id":"5ec31345f8f1d30017647907","created":"2020-05-18T22:59:17.609Z","last_modified":"2020-05-18T22:59:17.609Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/LINCS/P100/lincs-runGCTReportApi.view?runId=87662&remote=true&reportName=GCT%20File%20P100"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate29_annotated_minimized_2020-05-18_18-50-11_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate29_annotated_minimized_2020-05-18_18-50-11_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate29_annotated_minimized_2020-05-18_18-50-11.cfg"}}}
18 May 2020 15:59:17,804 INFO : Sent POST request to https://api.clue.io/api/psp
18 May 2020 15:59:17,807 INFO : Checking status of job 5ec31345f8f1d30017647907
18 May 2020 15:59:17,936 INFO : Status: Waiting_To_Download
18 May 2020 15:59:37,936 INFO : Checking status of job 5ec31345f8f1d30017647907
18 May 2020 15:59:38,223 INFO : Status: Waiting_To_Download
18 May 2020 15:59:58,224 INFO : Checking status of job 5ec31345f8f1d30017647907
18 May 2020 15:59:58,512 INFO : Status: Waiting_To_Download
18 May 2020 16:00:18,512 INFO : Checking status of job 5ec31345f8f1d30017647907
18 May 2020 16:00:18,808 INFO : Status: Waiting_To_Download
18 May 2020 16:00:38,808 INFO : Checking status of job 5ec31345f8f1d30017647907
18 May 2020 16:00:39,176 INFO : Status: Waiting_To_Download
18 May 2020 16:00:59,177 INFO : Checking status of job 5ec31345f8f1d30017647907
18 May 2020 16:00:59,461 INFO : Status: Waiting_To_Download
18 May 2020 16:01:19,462 INFO : Checking status of job 5ec31345f8f1d30017647907
18 May 2020 16:01:19,749 INFO : Status: Waiting_To_Download
18 May 2020 16:01:39,749 INFO : Checking status of job 5ec31345f8f1d30017647907
18 May 2020 16:01:40,035 INFO : Status: Waiting_To_Download
18 May 2020 16:02:00,035 INFO : Checking status of job 5ec31345f8f1d30017647907
18 May 2020 16:02:00,402 INFO : Status: Waiting_To_Download
18 May 2020 16:02:20,402 INFO : Checking status of job 5ec31345f8f1d30017647907
18 May 2020 16:02:20,692 INFO : Status: Waiting_To_Download
18 May 2020 16:02:40,693 INFO : Checking status of job 5ec31345f8f1d30017647907
18 May 2020 16:02:41,067 INFO : Status: Waiting_To_Download
18 May 2020 16:03:01,067 INFO : Checking status of job 5ec31345f8f1d30017647907
18 May 2020 16:03:01,358 INFO : Status: Waiting_To_Download
18 May 2020 16:03:21,358 INFO : Checking status of job 5ec31345f8f1d30017647907
18 May 2020 16:03:21,646 INFO : Status: Waiting_To_Download
18 May 2020 16:03:41,646 INFO : Checking status of job 5ec31345f8f1d30017647907
18 May 2020 16:03:41,938 INFO : Status: Waiting_To_Download
18 May 2020 16:04:01,939 INFO : Checking status of job 5ec31345f8f1d30017647907
18 May 2020 16:04:02,305 INFO : Status: Waiting_To_Download
18 May 2020 16:04:22,305 INFO : Checking status of job 5ec31345f8f1d30017647907
18 May 2020 16:04:22,579 INFO : Status: Waiting_To_Download
18 May 2020 16:04:42,579 INFO : Checking status of job 5ec31345f8f1d30017647907
18 May 2020 16:04:42,862 INFO : Status: created LVL2 GCT
18 May 2020 16:05:02,863 INFO : Checking status of job 5ec31345f8f1d30017647907
18 May 2020 16:05:03,155 INFO : Status: created LVL2 GCT
18 May 2020 16:05:23,155 INFO : Checking status of job 5ec31345f8f1d30017647907
18 May 2020 16:05:23,519 INFO : Status: created LVL2 GCT
18 May 2020 16:05:43,520 INFO : Checking status of job 5ec31345f8f1d30017647907
18 May 2020 16:05:43,806 INFO : Status: created LVL2 GCT
18 May 2020 16:06:03,806 INFO : Checking status of job 5ec31345f8f1d30017647907
18 May 2020 16:06:04,094 INFO : Status: created LVL2 GCT
18 May 2020 16:06:24,094 INFO : Checking status of job 5ec31345f8f1d30017647907
18 May 2020 16:06:24,378 INFO : Status: created LVL2 GCT
18 May 2020 16:06:44,379 INFO : Checking status of job 5ec31345f8f1d30017647907
18 May 2020 16:06:44,666 INFO : Status: created LVL2 GCT
18 May 2020 16:07:04,666 INFO : Checking status of job 5ec31345f8f1d30017647907
18 May 2020 16:07:04,950 INFO : Status: created LVL2 GCT
18 May 2020 16:07:24,951 INFO : Checking status of job 5ec31345f8f1d30017647907
18 May 2020 16:07:25,240 INFO : Status: created LVL2 GCT
18 May 2020 16:07:45,241 INFO : Checking status of job 5ec31345f8f1d30017647907
18 May 2020 16:07:45,524 INFO : Status: created LVL2 GCT
18 May 2020 16:08:05,525 INFO : Checking status of job 5ec31345f8f1d30017647907
18 May 2020 16:08:05,894 INFO : Status: created LVL2 GCT
18 May 2020 16:08:25,895 INFO : Checking status of job 5ec31345f8f1d30017647907
18 May 2020 16:08:26,180 INFO : Status: created LVL2 GCT
18 May 2020 16:08:46,181 INFO : Checking status of job 5ec31345f8f1d30017647907
18 May 2020 16:08:46,464 INFO : Status: created LVL2 GCT
18 May 2020 16:09:06,464 INFO : Checking status of job 5ec31345f8f1d30017647907
18 May 2020 16:09:06,751 INFO : Status: created LVL2 GCT
18 May 2020 16:09:26,751 INFO : Checking status of job 5ec31345f8f1d30017647907
18 May 2020 16:09:27,041 INFO : Status: created LVL2 GCT
18 May 2020 16:09:47,041 INFO : Checking status of job 5ec31345f8f1d30017647907
18 May 2020 16:09:47,325 INFO : Status: created LVL2 GCT
18 May 2020 16:10:07,325 INFO : Checking status of job 5ec31345f8f1d30017647907
18 May 2020 16:10:07,687 INFO : Status: created LVL2 GCT
18 May 2020 16:10:27,687 INFO : Checking status of job 5ec31345f8f1d30017647907
18 May 2020 16:10:27,971 INFO : Status: created LVL2 GCT
18 May 2020 16:10:47,971 INFO : Checking status of job 5ec31345f8f1d30017647907
18 May 2020 16:10:48,257 INFO : Status: created LVL2 GCT
18 May 2020 16:11:08,257 INFO : Checking status of job 5ec31345f8f1d30017647907
18 May 2020 16:11:08,540 INFO : Status: created LVL2 GCT
18 May 2020 16:11:28,540 INFO : Checking status of job 5ec31345f8f1d30017647907
18 May 2020 16:11:28,902 INFO : Status: created LVL2 GCT
18 May 2020 16:11:48,903 INFO : Checking status of job 5ec31345f8f1d30017647907
18 May 2020 16:11:49,190 INFO : Status: created LVL2 GCT
18 May 2020 16:12:09,190 INFO : Checking status of job 5ec31345f8f1d30017647907
18 May 2020 16:12:09,474 INFO : Status: created LVL2 GCT
18 May 2020 16:12:29,475 INFO : Checking status of job 5ec31345f8f1d30017647907
18 May 2020 16:12:29,754 INFO : Status: created LVL2 GCT
18 May 2020 16:12:49,754 INFO : Checking status of job 5ec31345f8f1d30017647907
18 May 2020 16:12:50,118 INFO : Status: created LVL2 GCT
18 May 2020 16:13:10,118 INFO : Checking status of job 5ec31345f8f1d30017647907
18 May 2020 16:13:10,404 INFO : Status: created LVL2 GCT
18 May 2020 16:13:30,404 INFO : Checking status of job 5ec31345f8f1d30017647907
18 May 2020 16:13:30,689 INFO : Status: created LVL 3 GCT
18 May 2020 16:13:50,690 INFO : Checking status of job 5ec31345f8f1d30017647907
18 May 2020 16:13:50,975 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
18 May 2020 16:13:50,975 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
18 May 2020 16:13:50,975 INFO : Finished running LINCS PSP pipeline.
18 May 2020 16:13:50,976 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'