07 Jan 2020 14:57:48,815 INFO : Re-running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate91_annotated_minimized_2020-01-02_12-26-50
07 Jan 2020 14:57:48,815 INFO : =======================================
07 Jan 2020 14:57:49,172 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
07 Jan 2020 14:57:49,172 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate91_annotated_minimized_2020-01-02_12-26-50
07 Jan 2020 14:57:49,172 INFO : Resubmitting job for runId: 80522, name: LINCS_P100_DIA_Plate91_annotated_minimized_2020-01-02_12-26-50
07 Jan 2020 14:57:49,172 INFO : Old job details:
07 Jan 2020 14:57:49,172 INFO : Id: 287
07 Jan 2020 14:57:49,172 INFO : Pipeline job Id: 81219
07 Jan 2020 14:57:49,173 INFO : Run Id: 80522
07 Jan 2020 14:57:49,173 INFO : PSP Job Id: 5e1509119351020013cb887a
07 Jan 2020 14:57:49,173 INFO : PSP Job name: LINCS_P100_DIA_Plate91_annotated_minimized_2020-01-02_12-26-50_2
07 Jan 2020 14:57:49,173 INFO : PSP Job status: created LVL2 GCT
07 Jan 2020 14:57:49,173 INFO : JSON: {"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate91_annotated_minimized_2020-01-02_12-26-50_LVL4.gct"}},"assay":"P100","created":"2020-01-07T22:41:21.617Z","name":"LINCS_P100_DIA_Plate91_annotated_minimized_2020-01-02_12-26-50_2","id":"5e1509119351020013cb887a","last_modified":"2020-01-07T22:44:55.153Z","config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate91_annotated_minimized_2020-01-02_12-26-50.cfg"}},"level 2":{"s3":{"url":"s3://proteomics.clue.io/psp/level2/LINCS_P100_DIA_Plate91_annotated_minimized_2020-01-02_12-26-50_2_LVL2.gct"},"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=80522&remote=true&reportName=GCT%20File%20P100"}},"status":"created LVL2 GCT","level 3":{"s3":{"message":"dry error: need more than 1 value to unpack"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate91_annotated_minimized_2020-01-02_12-26-50_LVL3.gct"}}}
07 Jan 2020 14:57:49,173 INFO : Resubmitting...
07 Jan 2020 14:57:49,175 INFO : Looking for existing job with name LINCS_P100_DIA_Plate91_annotated_minimized_2020-01-02_12-26-50
07 Jan 2020 14:57:49,554 INFO : Job with name LINCS_P100_DIA_Plate91_annotated_minimized_2020-01-02_12-26-50exists.
07 Jan 2020 14:57:49,554 INFO : Looking for existing job with name LINCS_P100_DIA_Plate91_annotated_minimized_2020-01-02_12-26-50_2
07 Jan 2020 14:57:49,675 INFO : Job with name LINCS_P100_DIA_Plate91_annotated_minimized_2020-01-02_12-26-50_2exists.
07 Jan 2020 14:57:49,675 INFO : Looking for existing job with name LINCS_P100_DIA_Plate91_annotated_minimized_2020-01-02_12-26-50_3
07 Jan 2020 14:57:49,797 INFO : PSP job name: LINCS_P100_DIA_Plate91_annotated_minimized_2020-01-02_12-26-50_3
07 Jan 2020 14:57:49,797 INFO : Sending JSON:
07 Jan 2020 14:57:49,797 INFO : {
"level 4": {"panorama": {
"method": "PUT",
"url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate91_annotated_minimized_2020-01-02_12-26-50_LVL4.gct"
}},
"assay": "P100",
"name": "LINCS_P100_DIA_Plate91_annotated_minimized_2020-01-02_12-26-50_3",
"config": {"panorama": {
"method": "PUT",
"url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate91_annotated_minimized_2020-01-02_12-26-50.cfg"
}},
"level 2": {"panorama": {
"method": "GET",
"url": "https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=80522&remote=true&reportName=GCT%20File%20P100"
}},
"level 3": {"panorama": {
"method": "PUT",
"url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate91_annotated_minimized_2020-01-02_12-26-50_LVL3.gct"
}}
}
07 Jan 2020 14:57:49,798 INFO : Sending POST request to https://api.clue.io/api/psp
07 Jan 2020 14:57:49,989 INFO : Response code - 200
07 Jan 2020 14:57:49,989 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate91_annotated_minimized_2020-01-02_12-26-50_3","assay":"P100","status":"Waiting_To_Download","id":"5e150ced5beec6001388e3e4","created":"2020-01-07T22:57:49.869Z","last_modified":"2020-01-07T22:57:49.869Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=80522&remote=true&reportName=GCT%20File%20P100"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate91_annotated_minimized_2020-01-02_12-26-50_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate91_annotated_minimized_2020-01-02_12-26-50_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate91_annotated_minimized_2020-01-02_12-26-50.cfg"}}}
07 Jan 2020 14:57:49,989 INFO : Sent POST request to https://api.clue.io/api/psp
07 Jan 2020 14:57:49,991 INFO : Checking status of job 5e150ced5beec6001388e3e4
07 Jan 2020 14:57:50,112 INFO : Status: Waiting_To_Download
07 Jan 2020 14:58:10,113 INFO : Checking status of job 5e150ced5beec6001388e3e4
07 Jan 2020 14:58:10,386 INFO : Status: created LVL2 GCT
07 Jan 2020 14:58:30,387 INFO : Checking status of job 5e150ced5beec6001388e3e4
07 Jan 2020 14:58:30,672 INFO : Status: created LVL2 GCT
07 Jan 2020 14:58:30,672 ERROR: Error in PSP job. Error: level 3: dry error: need more than 1 value to unpack
07 Jan 2020 14:58:30,747 INFO : Finished running LINCS PSP pipeline.
07 Jan 2020 14:58:30,747 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'