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Running LINCS pipeline on PSP for: LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35

P100

Job Status

Created: 2019-12-20 15:43:30
Modified: 2020-06-01 16:07:27
Email: karen@broadinstitute.org
Status: ERROR
Info:
Description: Running LINCS pipeline on PSP for: LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35
File Path: /data/labkey/files/LINCS/P100/@files/LincsPSP_LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35_2019-12-20_15-43-29.log
Files: LincsPSP_LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35_2019-12-20_15-43-29.log
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Log File


20 Dec 2019 15:43:29,843 INFO : Running LINCS pipeline on PSP for:  LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35
20 Dec 2019 15:43:29,843 INFO : =======================================
20 Dec 2019 15:43:31,620 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
20 Dec 2019 15:43:31,621 INFO : Running LINCS PSP pipeline for LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35
20 Dec 2019 15:43:31,624 INFO : Submitting job for runId: 80160, name: LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35
20 Dec 2019 15:43:31,629 INFO : Looking for existing job with name LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35
20 Dec 2019 15:43:32,213 INFO : PSP job name: LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35
20 Dec 2019 15:43:32,214 INFO : Sending JSON:
20 Dec 2019 15:43:32,214 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=80160&remote=true&reportName=GCT%20File%20P100"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35_LVL3.gct"
  }}
}
20 Dec 2019 15:43:32,215 INFO : Sending POST request to https://api.clue.io/api/psp
20 Dec 2019 15:43:32,575 INFO : Response code - 200
20 Dec 2019 15:43:32,575 INFO : Response from server: {"name":"LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35","assay":"P100","status":"Waiting_To_Download","id":"5dfd5ca49351020013cb82b5","created":"2019-12-20T23:43:32.286Z","last_modified":"2019-12-20T23:43:32.286Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=80160&remote=true&reportName=GCT%20File%20P100"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35.cfg"}}}
20 Dec 2019 15:43:32,579 INFO : Sent POST request to https://api.clue.io/api/psp
20 Dec 2019 15:43:32,581 INFO : Checking status of job 5dfd5ca49351020013cb82b5
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20 Dec 2019 16:14:19,467 ERROR: Exceeded 30 minute wait time.
20 Dec 2019 16:14:19,758 INFO : Finished running LINCS PSP pipeline.
20 Dec 2019 16:14:19,758 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'