20 Dec 2019 15:40:57,873 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'
20 Dec 2019 15:41:03,795 INFO : Created temp file because input is from cloud: s3://s3.amazonaws.com/mc-panoramaweb/container628/LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35.sky.zip
20 Dec 2019 15:41:03,797 INFO : Starting to import Skyline document from LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35.sky.zip
20 Dec 2019 15:41:03,797 INFO : Expanding LINCS_P100_PRM_PlateAD1_annotated_minimized.skyd
20 Dec 2019 15:41:05,613 INFO : Expanding LINCS_P100_PRM_PlateAD1_annotated_minimized.sky.view
20 Dec 2019 15:41:05,613 INFO : Expanding LINCS_P100_PRM_PlateAD1_annotated_minimized.sky
20 Dec 2019 15:41:05,710 WARN : The version of this Skyline document is 19.12. This is newer than the highest supported version 4.1
20 Dec 2019 15:41:05,719 INFO : 1% Done
20 Dec 2019 15:41:09,876 INFO : Inserting NANS_CL01
20 Dec 2019 15:41:09,937 INFO : 2% Done
20 Dec 2019 15:41:11,205 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:41:11,205 INFO : Inserting AHNAK_CL01
20 Dec 2019 15:41:11,235 INFO : 3% Done
20 Dec 2019 15:41:12,140 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:41:12,140 INFO : Inserting DDX54_CL02
20 Dec 2019 15:41:12,173 INFO : 5% Done
20 Dec 2019 15:41:13,716 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:41:13,717 INFO : Inserting HSPC216_CL02
20 Dec 2019 15:41:13,746 INFO : 6% Done
20 Dec 2019 15:41:14,913 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:41:14,914 INFO : Inserting PFKF_CL03
20 Dec 2019 15:41:14,938 INFO : 7% Done
20 Dec 2019 15:41:16,352 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:41:16,352 INFO : Inserting TMSL3_CL03
20 Dec 2019 15:41:16,372 INFO : 8% Done
20 Dec 2019 15:41:18,457 INFO : 10% Done
20 Dec 2019 15:41:20,626 DEBUG: Total peptides inserted: 2
20 Dec 2019 15:41:20,626 INFO : Inserting AD029_CL04
20 Dec 2019 15:41:20,672 INFO : 11% Done
20 Dec 2019 15:41:21,907 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:41:21,908 INFO : Inserting CDC2_CL04
20 Dec 2019 15:41:21,925 INFO : 12% Done
20 Dec 2019 15:41:23,345 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:41:23,345 INFO : Inserting ATAD2_CL05
20 Dec 2019 15:41:23,376 INFO : 13% Done
20 Dec 2019 15:41:24,314 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:41:24,314 INFO : Inserting BAT2D1_CL05
20 Dec 2019 15:41:24,347 INFO : 14% Done
20 Dec 2019 15:41:25,304 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:41:25,304 INFO : Inserting AGS1_CL06
20 Dec 2019 15:41:25,330 INFO : 15% Done
20 Dec 2019 15:41:26,113 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:41:26,114 INFO : Inserting A2D_CL07
20 Dec 2019 15:41:26,130 INFO : 16% Done
20 Dec 2019 15:41:27,561 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:41:27,562 INFO : Inserting ZNF672_CL07
20 Dec 2019 15:41:28,398 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:41:28,398 INFO : Inserting ABI1_CL08
20 Dec 2019 15:41:28,427 INFO : 17% Done
20 Dec 2019 15:41:29,668 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:41:29,668 INFO : Inserting FOSL2_CL08
20 Dec 2019 15:41:29,698 INFO : 18% Done
20 Dec 2019 15:41:30,673 INFO : 19% Done
20 Dec 2019 15:41:31,557 DEBUG: Total peptides inserted: 2
20 Dec 2019 15:41:31,557 INFO : Inserting C17orf85_CL09
20 Dec 2019 15:41:31,582 INFO : 20% Done
20 Dec 2019 15:41:33,028 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:41:33,029 INFO : Inserting EPLIN_CL09
20 Dec 2019 15:41:33,060 INFO : 21% Done
20 Dec 2019 15:41:34,127 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:41:34,128 INFO : Inserting BAF155_CL10
20 Dec 2019 15:41:34,141 INFO : 22% Done
20 Dec 2019 15:41:34,973 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:41:34,973 INFO : Inserting FUBP2_CL10
20 Dec 2019 15:41:34,988 INFO : 23% Done
20 Dec 2019 15:41:36,159 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:41:36,159 INFO : Inserting MAP3K2_CL11
20 Dec 2019 15:41:37,206 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:41:37,206 INFO : Inserting FAS_CL12
20 Dec 2019 15:41:37,241 INFO : 25% Done
20 Dec 2019 15:41:40,358 DEBUG: Total peptides inserted: 2
20 Dec 2019 15:41:40,358 INFO : Inserting ARM2_CL13
20 Dec 2019 15:41:40,373 INFO : 26% Done
20 Dec 2019 15:41:41,565 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:41:41,566 INFO : Inserting C9orf88_CL14
20 Dec 2019 15:41:42,433 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:41:42,434 INFO : Inserting ISPK1_CL14
20 Dec 2019 15:41:42,463 INFO : 27% Done
20 Dec 2019 15:41:43,790 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:41:43,791 INFO : Inserting RBM14_CL15
20 Dec 2019 15:41:43,805 INFO : 28% Done
20 Dec 2019 15:41:44,865 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:41:44,865 INFO : Inserting KIAA0701_CL15
20 Dec 2019 15:41:44,880 INFO : 29% Done
20 Dec 2019 15:41:46,024 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:41:46,025 INFO : Inserting RBM17_CL16
20 Dec 2019 15:41:46,058 INFO : 31% Done
20 Dec 2019 15:41:47,549 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:41:47,549 INFO : Inserting SLC38A1_CL16
20 Dec 2019 15:41:48,342 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:41:48,342 INFO : Inserting NOC2L_CL17
20 Dec 2019 15:41:49,439 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:41:49,439 INFO : Inserting RPL12_CL17
20 Dec 2019 15:41:49,457 INFO : 33% Done
20 Dec 2019 15:41:51,145 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:41:51,145 INFO : Inserting DDX48_CL18
20 Dec 2019 15:41:51,204 INFO : 34% Done
20 Dec 2019 15:41:52,689 INFO : 35% Done
20 Dec 2019 15:41:53,977 DEBUG: Total peptides inserted: 2
20 Dec 2019 15:41:53,977 INFO : Inserting HCA90_CL18
20 Dec 2019 15:41:53,995 INFO : 36% Done
20 Dec 2019 15:41:55,796 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:41:55,796 INFO : Inserting CAT53_CL19
20 Dec 2019 15:41:55,813 INFO : 37% Done
20 Dec 2019 15:41:57,241 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:41:57,241 INFO : Inserting EPLIN_CL19
20 Dec 2019 15:41:57,261 INFO : 39% Done
20 Dec 2019 15:41:58,904 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:41:58,904 INFO : Inserting HBXAP_CL21
20 Dec 2019 15:41:58,921 INFO : 40% Done
20 Dec 2019 15:42:00,381 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:42:00,381 INFO : Inserting DCAF1_CL22
20 Dec 2019 15:42:00,410 INFO : 41% Done
20 Dec 2019 15:42:01,683 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:42:01,683 INFO : Inserting CDW2_CL22
20 Dec 2019 15:42:01,703 INFO : 42% Done
20 Dec 2019 15:42:03,327 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:42:03,327 INFO : Inserting ANLN_CL23
20 Dec 2019 15:42:03,349 INFO : 43% Done
20 Dec 2019 15:42:04,594 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:42:04,595 INFO : Inserting OCIA_CL23
20 Dec 2019 15:42:04,627 INFO : 44% Done
20 Dec 2019 15:42:05,690 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:42:05,690 INFO : Inserting FAM76B_CL24
20 Dec 2019 15:42:05,718 INFO : 45% Done
20 Dec 2019 15:42:07,268 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:42:07,268 INFO : Inserting HAT1_CL25
20 Dec 2019 15:42:07,350 INFO : 46% Done
20 Dec 2019 15:42:08,604 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:42:08,605 INFO : Inserting BRAF_CL26
20 Dec 2019 15:42:08,646 INFO : 47% Done
20 Dec 2019 15:42:10,142 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:42:10,142 INFO : Inserting DYRK_CL27
20 Dec 2019 15:42:10,173 INFO : 49% Done
20 Dec 2019 15:42:11,730 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:42:11,730 INFO : Inserting LRWD1_CL27
20 Dec 2019 15:42:11,746 INFO : 50% Done
20 Dec 2019 15:42:13,039 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:42:13,039 INFO : Inserting ALS2_CL28
20 Dec 2019 15:42:13,991 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:42:13,992 INFO : Inserting BRD4_CL29
20 Dec 2019 15:42:14,008 INFO : 51% Done
20 Dec 2019 15:42:15,538 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:42:15,538 INFO : Inserting ZC3H14_CL29
20 Dec 2019 15:42:15,593 INFO : 52% Done
20 Dec 2019 15:42:17,256 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:42:17,257 INFO : Inserting KIF4_CL30
20 Dec 2019 15:42:17,275 INFO : 53% Done
20 Dec 2019 15:42:18,808 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:42:18,808 INFO : Inserting MAP3K7_CL30
20 Dec 2019 15:42:18,824 INFO : 54% Done
20 Dec 2019 15:42:19,996 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:42:19,997 INFO : Inserting KIAA0722_CL31
20 Dec 2019 15:42:20,011 INFO : 55% Done
20 Dec 2019 15:42:21,173 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:42:21,173 INFO : Inserting PAK2_CL31
20 Dec 2019 15:42:21,231 INFO : 57% Done
20 Dec 2019 15:42:22,820 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:42:22,820 INFO : Inserting LAP2_CL32
20 Dec 2019 15:42:22,841 INFO : 58% Done
20 Dec 2019 15:42:24,774 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:42:24,775 INFO : Inserting BAT2_CL33
20 Dec 2019 15:42:24,807 INFO : 59% Done
20 Dec 2019 15:42:26,663 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:42:26,663 INFO : Inserting My038_CL33
20 Dec 2019 15:42:26,699 INFO : 61% Done
20 Dec 2019 15:42:28,631 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:42:28,632 INFO : Inserting EMK1_CL34
20 Dec 2019 15:42:28,694 INFO : 62% Done
20 Dec 2019 15:42:29,876 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:42:29,876 INFO : Inserting WDR20_CL34
20 Dec 2019 15:42:29,909 INFO : 63% Done
20 Dec 2019 15:42:31,376 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:42:31,376 INFO : Inserting THRAP3_CL35
20 Dec 2019 15:42:31,392 INFO : 64% Done
20 Dec 2019 15:42:32,608 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:42:32,608 INFO : Inserting CAIN_CL35
20 Dec 2019 15:42:32,635 INFO : 65% Done
20 Dec 2019 15:42:34,270 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:42:34,270 INFO : Inserting GPATC8_CL37
20 Dec 2019 15:42:34,346 INFO : 66% Done
20 Dec 2019 15:42:35,382 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:42:35,382 INFO : Inserting RP11-373M8.1-002_CL37
20 Dec 2019 15:42:35,421 INFO : 67% Done
20 Dec 2019 15:42:36,714 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:42:36,715 INFO : Inserting KIAA1734_CL38
20 Dec 2019 15:42:36,776 INFO : 68% Done
20 Dec 2019 15:42:37,821 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:42:37,821 INFO : Inserting MAP4_CL38
20 Dec 2019 15:42:37,885 INFO : 69% Done
20 Dec 2019 15:42:39,214 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:42:39,214 INFO : Inserting KIAA0217_CL39
20 Dec 2019 15:42:39,281 INFO : 70% Done
20 Dec 2019 15:42:40,571 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:42:40,571 INFO : Inserting CTG26_CL40
20 Dec 2019 15:42:40,605 INFO : 71% Done
20 Dec 2019 15:42:42,241 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:42:42,242 INFO : Inserting KIAA1991_CL40
20 Dec 2019 15:42:42,259 INFO : 72% Done
20 Dec 2019 15:42:43,622 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:42:43,623 INFO : Inserting DBP2_CL41
20 Dec 2019 15:42:43,648 INFO : 73% Done
20 Dec 2019 15:42:44,824 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:42:44,825 INFO : Inserting SRRM2_CL41
20 Dec 2019 15:42:44,852 INFO : 74% Done
20 Dec 2019 15:42:45,881 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:42:45,881 INFO : Inserting KIAA1321_CL42
20 Dec 2019 15:42:47,556 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:42:47,557 INFO : Inserting MAPKAPK1A_CL43
20 Dec 2019 15:42:47,624 INFO : 75% Done
20 Dec 2019 15:42:49,393 INFO : 76% Done
20 Dec 2019 15:42:50,718 DEBUG: Total peptides inserted: 2
20 Dec 2019 15:42:50,719 INFO : Inserting C22orf9_CL43
20 Dec 2019 15:42:50,747 INFO : 78% Done
20 Dec 2019 15:42:52,383 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:42:52,383 INFO : Inserting KIAA1844_CL44
20 Dec 2019 15:42:52,401 INFO : 79% Done
20 Dec 2019 15:42:53,603 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:42:53,603 INFO : Inserting CCNYL1_CL45
20 Dec 2019 15:42:53,659 INFO : 80% Done
20 Dec 2019 15:42:55,203 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:42:55,204 INFO : Inserting OK/SW-cl.2_CL46
20 Dec 2019 15:42:55,737 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:42:55,737 INFO : Inserting PDK1_CL46
20 Dec 2019 15:42:55,800 INFO : 81% Done
20 Dec 2019 15:42:57,482 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:42:57,483 INFO : Inserting PLEC1_CL47
20 Dec 2019 15:42:57,557 INFO : 82% Done
20 Dec 2019 15:42:59,055 DEBUG: Total peptides inserted: 2
20 Dec 2019 15:42:59,056 INFO : Inserting CASC3_CL48
20 Dec 2019 15:42:59,114 INFO : 84% Done
20 Dec 2019 15:43:00,371 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:43:00,372 INFO : Inserting BAT2D1_CL48
20 Dec 2019 15:43:00,402 INFO : 85% Done
20 Dec 2019 15:43:01,604 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:43:01,605 INFO : Inserting LAP2_CL49
20 Dec 2019 15:43:01,685 INFO : 86% Done
20 Dec 2019 15:43:03,339 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:43:03,340 INFO : Inserting TB7_CL49
20 Dec 2019 15:43:03,359 INFO : 87% Done
20 Dec 2019 15:43:05,077 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:43:05,077 INFO : Inserting IQGAP3_CL50
20 Dec 2019 15:43:05,106 INFO : 88% Done
20 Dec 2019 15:43:05,880 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:43:05,881 INFO : Inserting NFATC2IP_CL50
20 Dec 2019 15:43:05,910 INFO : 89% Done
20 Dec 2019 15:43:07,308 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:43:07,308 INFO : Inserting BAF45D_CL51
20 Dec 2019 15:43:07,394 INFO : 90% Done
20 Dec 2019 15:43:09,038 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:43:09,038 INFO : Inserting PP8000_CL51
20 Dec 2019 15:43:09,077 INFO : 91% Done
20 Dec 2019 15:43:10,840 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:43:10,841 INFO : Inserting HSPC075_CL52
20 Dec 2019 15:43:10,871 INFO : 92% Done
20 Dec 2019 15:43:12,367 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:43:12,367 INFO : Inserting C13orf8_CL52
20 Dec 2019 15:43:12,389 INFO : 94% Done
20 Dec 2019 15:43:13,705 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:43:13,705 INFO : Inserting JUND_CL53
20 Dec 2019 15:43:13,730 INFO : 95% Done
20 Dec 2019 15:43:15,207 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:43:15,207 INFO : Inserting CLTA_CL53
20 Dec 2019 15:43:15,802 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:43:15,802 INFO : Inserting KIAA0035_CL54
20 Dec 2019 15:43:15,817 INFO : 96% Done
20 Dec 2019 15:43:16,916 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:43:16,916 INFO : Inserting AP1GBP1_CL55
20 Dec 2019 15:43:16,931 INFO : 97% Done
20 Dec 2019 15:43:17,969 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:43:17,969 INFO : Inserting CIN85_CL55
20 Dec 2019 15:43:17,998 INFO : 98% Done
20 Dec 2019 15:43:19,671 DEBUG: Total peptides inserted: 1
20 Dec 2019 15:43:19,671 INFO : Done parsing Skyline document.
20 Dec 2019 15:43:27,156 INFO : Copied LINCS_P100_PRM_PlateAD1_annotated_minimized.skyd to cloud storage.
20 Dec 2019 15:43:28,740 INFO : Completed import of Skyline document from LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35.sky.zip
20 Dec 2019 15:43:28,746 INFO : 100% Done
20 Dec 2019 15:43:30,771 INFO : LINCS: Queued job Id 80756 for submitting POST request to PSP.
20 Dec 2019 15:43:31,030 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'