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Re-running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate91_annotated_minimized_2019-12-12_12-57-19

P100

Job Status

Created: 2019-12-12 13:35:56
Modified: 2020-06-01 16:07:27
Email: vsharma@uw.edu
Status: ERROR
Info:
Description: Re-running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate91_annotated_minimized_2019-12-12_12-57-19
File Path: /data/labkey/files/LINCS/P100/@files/LincsPSP_rerun_LINCS_P100_DIA_Plate91_annotated_minimized_2019-12-12_12-57-19_2019-12-12_13-35-55.log
Files: LincsPSP_rerun_LINCS_P100_DIA_Plate91_annotated_minimized_2019-12-12_12-57-19_2019-12-12_13-35-55.log
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Log File


12 Dec 2019 13:35:56,196 INFO : Re-running LINCS pipeline on PSP for:  LINCS_P100_DIA_Plate91_annotated_minimized_2019-12-12_12-57-19
12 Dec 2019 13:35:56,196 INFO : =======================================
12 Dec 2019 13:35:56,443 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
12 Dec 2019 13:35:56,444 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate91_annotated_minimized_2019-12-12_12-57-19
12 Dec 2019 13:35:56,444 INFO : Resubmitting job for runId: 79780, name: LINCS_P100_DIA_Plate91_annotated_minimized_2019-12-12_12-57-19
12 Dec 2019 13:35:56,444 INFO : Old job details: 
12 Dec 2019 13:35:56,444 INFO : Id: 276
12 Dec 2019 13:35:56,444 INFO : Pipeline job Id: 80381
12 Dec 2019 13:35:56,444 INFO : Run Id: 79780
12 Dec 2019 13:35:56,445 INFO : PSP Job Id: 5df280b5c803bd00132da3ef
12 Dec 2019 13:35:56,445 INFO : PSP Job name: LINCS_P100_DIA_Plate91_annotated_minimized_2019-12-12_12-57-19
12 Dec 2019 13:35:56,445 INFO : PSP Job status: Waiting_To_Download
12 Dec 2019 13:35:56,445 INFO : JSON: {"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate91_annotated_minimized_2019-12-12_12-57-19_LVL4.gct"}},"assay":"P100","created":"2019-12-12T18:02:29.824Z","name":"LINCS_P100_DIA_Plate91_annotated_minimized_2019-12-12_12-57-19","id":"5df280b5c803bd00132da3ef","last_modified":"2019-12-12T18:02:29.824Z","config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate91_annotated_minimized_2019-12-12_12-57-19.cfg"}},"level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=79780&remote=true&reportName=GCT%20File%20P100"}},"status":"Waiting_To_Download","level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate91_annotated_minimized_2019-12-12_12-57-19_LVL3.gct"}}}
12 Dec 2019 13:35:56,445 INFO : Resubmitting...
12 Dec 2019 13:35:56,447 INFO : Looking for existing job with name LINCS_P100_DIA_Plate91_annotated_minimized_2019-12-12_12-57-19
12 Dec 2019 13:35:56,862 INFO : Job with name LINCS_P100_DIA_Plate91_annotated_minimized_2019-12-12_12-57-19exists.
12 Dec 2019 13:35:56,862 INFO : Looking for existing job with name LINCS_P100_DIA_Plate91_annotated_minimized_2019-12-12_12-57-19_2
12 Dec 2019 13:35:56,981 INFO : PSP job name: LINCS_P100_DIA_Plate91_annotated_minimized_2019-12-12_12-57-19_2
12 Dec 2019 13:35:56,982 INFO : Sending JSON:
12 Dec 2019 13:35:56,982 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate91_annotated_minimized_2019-12-12_12-57-19_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_DIA_Plate91_annotated_minimized_2019-12-12_12-57-19_2",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate91_annotated_minimized_2019-12-12_12-57-19.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=79780&remote=true&reportName=GCT%20File%20P100"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate91_annotated_minimized_2019-12-12_12-57-19_LVL3.gct"
  }}
}
12 Dec 2019 13:35:56,982 INFO : Sending POST request to https://api.clue.io/api/psp
12 Dec 2019 13:35:57,337 INFO : Response code - 200
12 Dec 2019 13:35:57,337 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate91_annotated_minimized_2019-12-12_12-57-19_2","assay":"P100","status":"Waiting_To_Download","id":"5df2b2bdc803bd00132da400","created":"2019-12-12T21:35:57.050Z","last_modified":"2019-12-12T21:35:57.050Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=79780&remote=true&reportName=GCT%20File%20P100"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate91_annotated_minimized_2019-12-12_12-57-19_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate91_annotated_minimized_2019-12-12_12-57-19_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate91_annotated_minimized_2019-12-12_12-57-19.cfg"}}}
12 Dec 2019 13:35:57,337 INFO : Sent POST request to https://api.clue.io/api/psp
12 Dec 2019 13:35:57,339 INFO : Checking status of job 5df2b2bdc803bd00132da400
12 Dec 2019 13:35:57,459 INFO : Status: Waiting_To_Download
12 Dec 2019 13:36:17,460 INFO : Checking status of job 5df2b2bdc803bd00132da400
12 Dec 2019 13:36:17,738 INFO : Status: created LVL2 GCT
12 Dec 2019 13:36:37,739 INFO : Checking status of job 5df2b2bdc803bd00132da400
12 Dec 2019 13:36:38,012 INFO : Status: created LVL2 GCT
12 Dec 2019 13:36:58,012 INFO : Checking status of job 5df2b2bdc803bd00132da400
12 Dec 2019 13:36:58,293 INFO : Status: created LVL2 GCT
12 Dec 2019 13:37:18,293 INFO : Checking status of job 5df2b2bdc803bd00132da400
12 Dec 2019 13:37:18,638 INFO : Status: created LVL2 GCT
12 Dec 2019 13:37:38,639 INFO : Checking status of job 5df2b2bdc803bd00132da400
12 Dec 2019 13:37:38,916 INFO : Status: created LVL2 GCT
12 Dec 2019 13:37:58,916 INFO : Checking status of job 5df2b2bdc803bd00132da400
12 Dec 2019 13:37:59,181 INFO : Status: created LVL2 GCT
12 Dec 2019 13:38:19,182 INFO : Checking status of job 5df2b2bdc803bd00132da400
12 Dec 2019 13:38:19,454 INFO : Status: created LVL2 GCT
12 Dec 2019 13:38:39,455 INFO : Checking status of job 5df2b2bdc803bd00132da400
12 Dec 2019 13:38:39,813 INFO : Status: created LVL2 GCT
12 Dec 2019 13:38:59,813 INFO : Checking status of job 5df2b2bdc803bd00132da400
12 Dec 2019 13:39:00,091 INFO : Status: created LVL2 GCT
12 Dec 2019 13:39:20,092 INFO : Checking status of job 5df2b2bdc803bd00132da400
12 Dec 2019 13:39:20,357 INFO : Status: created LVL2 GCT
12 Dec 2019 13:39:40,358 INFO : Checking status of job 5df2b2bdc803bd00132da400
12 Dec 2019 13:39:40,707 INFO : Status: created LVL2 GCT
12 Dec 2019 13:39:40,709 ERROR: Error in PSP job. Error: level 3: dry error: need more than 1 value to unpack
12 Dec 2019 13:39:41,206 INFO : Finished running LINCS PSP pipeline.
12 Dec 2019 13:39:41,206 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'