Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate69_annotated_minimized_2019-12-11

Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate69_annotated_minimized_2019-12-11_10-54-09

P100

Job Status

Created:

2019-12-11 08:01:03

Modified:

2020-06-01 16:07:27

Email:

karen@broadinstitute.org

Status:

ERROR

Info:

Description:

Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate69_annotated_minimized_2019-12-11_10-54-09

File Path:

/data/labkey/files/LINCS/P100/@files/LincsPSP_LINCS_P100_DIA_Plate69_annotated_minimized_2019-12-11_10-54-09_2019-12-11_08-01-03.log

Files:

LincsPSP_LINCS_P100_DIA_Plate69_annotated_minimized_2019-12-11_10-54-09_2019-12-11_08-01-03.log

Join job:

Status	Description

Split jobs:

Status	Description

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Log File

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11 Dec 2019 08:01:03,293 INFO : Running LINCS pipeline on PSP for:  LINCS_P100_DIA_Plate69_annotated_minimized_2019-12-11_10-54-09

11 Dec 2019 08:01:03,293 INFO : =======================================

11 Dec 2019 08:02:52,108 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'

11 Dec 2019 08:02:52,109 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate69_annotated_minimized_2019-12-11_10-54-09

11 Dec 2019 08:02:52,109 INFO : Submitting job for runId: 79656, name: LINCS_P100_DIA_Plate69_annotated_minimized_2019-12-11_10-54-09

11 Dec 2019 08:02:52,110 INFO : Looking for existing job with name LINCS_P100_DIA_Plate69_annotated_minimized_2019-12-11_10-54-09

11 Dec 2019 08:02:52,595 INFO : PSP job name: LINCS_P100_DIA_Plate69_annotated_minimized_2019-12-11_10-54-09

11 Dec 2019 08:02:52,596 INFO : Sending JSON:

11 Dec 2019 08:02:52,596 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate69_annotated_minimized_2019-12-11_10-54-09_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_DIA_Plate69_annotated_minimized_2019-12-11_10-54-09",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate69_annotated_minimized_2019-12-11_10-54-09.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=79656&remote=true&reportName=GCT%20File%20P100"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate69_annotated_minimized_2019-12-11_10-54-09_LVL3.gct"
  }}
}

11 Dec 2019 08:02:52,596 INFO : Sending POST request to https://api.clue.io/api/psp

11 Dec 2019 08:02:52,822 INFO : Response code - 200

11 Dec 2019 08:02:52,822 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate69_annotated_minimized_2019-12-11_10-54-09","assay":"P100","status":"Waiting_To_Download","id":"5df1132cc803bd00132da25a","created":"2019-12-11T16:02:52.662Z","last_modified":"2019-12-11T16:02:52.662Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=79656&remote=true&reportName=GCT%20File%20P100"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate69_annotated_minimized_2019-12-11_10-54-09_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate69_annotated_minimized_2019-12-11_10-54-09_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate69_annotated_minimized_2019-12-11_10-54-09.cfg"}}}

11 Dec 2019 08:02:52,823 INFO : Sent POST request to https://api.clue.io/api/psp

11 Dec 2019 08:02:52,824 INFO : Checking status of job 5df1132cc803bd00132da25a

11 Dec 2019 08:02:52,943 INFO : Status: Waiting_To_Download

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11 Dec 2019 08:33:38,874 ERROR: Exceeded 30 minute wait time.

11 Dec 2019 08:33:39,017 INFO : Finished running LINCS PSP pipeline.

11 Dec 2019 08:33:39,018 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'

PanoramaWeb

PanoramaWeb

Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate69_annotated_minimized_2019-12-11_10-54-09

Job Status

Log File