Re-running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14

Re-running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14_15-28-26

P100

Job Status

Created:

2019-11-14 14:30:46

Modified:

2020-06-01 16:07:27

Email:

vsharma@uw.edu

Status:

COMPLETE

Info:

Description:

Re-running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14_15-28-26

File Path:

/data/labkey/files/LINCS/P100/@files/LincsPSP_rerun_LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14_15-28-26_2019-11-14_14-30-46.log

Files:

LincsPSP_rerun_LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14_15-28-26_2019-11-14_14-30-46.log

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14 Nov 2019 14:30:46,262 INFO : Re-running LINCS pipeline on PSP for:  LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14_15-28-26

14 Nov 2019 14:30:46,263 INFO : =======================================

14 Nov 2019 14:30:46,618 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'

14 Nov 2019 14:30:46,618 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14_15-28-26

14 Nov 2019 14:30:46,619 INFO : Resubmitting job for runId: 78261, name: LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14_15-28-26

14 Nov 2019 14:30:46,619 INFO : Old job details:

14 Nov 2019 14:30:46,619 INFO : Id: 261

14 Nov 2019 14:30:46,620 INFO : Pipeline job Id: 78920

14 Nov 2019 14:30:46,620 INFO : Run Id: 78261

14 Nov 2019 14:30:46,621 INFO : PSP Job Id: 5dcdbb4a6174be0019043f8b

14 Nov 2019 14:30:46,635 INFO : PSP Job name: LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14_15-28-26

14 Nov 2019 14:30:46,635 INFO : PSP Job status: Waiting_To_Download

14 Nov 2019 14:30:46,636 INFO : JSON: {"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14_15-28-26_LVL4.gct"}},"assay":"P100","created":"2019-11-14T20:38:34.495Z","name":"LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14_15-28-26","id":"5dcdbb4a6174be0019043f8b","last_modified":"2019-11-14T20:38:34.495Z","config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14_15-28-26.cfg"}},"level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=78261&remote=true&reportName=GCT%20File%20P100"}},"status":"Waiting_To_Download","level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14_15-28-26_LVL3.gct"}}}

14 Nov 2019 14:30:46,636 INFO : Resubmitting...

14 Nov 2019 14:30:46,639 INFO : Looking for existing job with name LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14_15-28-26

14 Nov 2019 14:30:47,014 INFO : Job with name LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14_15-28-26exists.

14 Nov 2019 14:30:47,018 INFO : Looking for existing job with name LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14_15-28-26_2

14 Nov 2019 14:30:47,129 INFO : PSP job name: LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14_15-28-26_2

14 Nov 2019 14:30:47,130 INFO : Sending JSON:

14 Nov 2019 14:30:47,131 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14_15-28-26_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14_15-28-26_2",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14_15-28-26.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=78261&remote=true&reportName=GCT%20File%20P100"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14_15-28-26_LVL3.gct"
  }}
}

14 Nov 2019 14:30:47,132 INFO : Sending POST request to https://api.clue.io/api/psp

14 Nov 2019 14:30:47,350 INFO : Response code - 200

14 Nov 2019 14:30:47,351 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14_15-28-26_2","assay":"P100","status":"Waiting_To_Download","id":"5dcdd5976174be0019043f9a","created":"2019-11-14T22:30:47.204Z","last_modified":"2019-11-14T22:30:47.204Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=78261&remote=true&reportName=GCT%20File%20P100"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14_15-28-26_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14_15-28-26_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14_15-28-26.cfg"}}}

14 Nov 2019 14:30:47,352 INFO : Sent POST request to https://api.clue.io/api/psp

14 Nov 2019 14:30:47,354 INFO : Checking status of job 5dcdd5976174be0019043f9a

14 Nov 2019 14:30:47,467 INFO : Status: Waiting_To_Download

14 Nov 2019 14:31:07,468 INFO : Checking status of job 5dcdd5976174be0019043f9a

14 Nov 2019 14:31:07,764 INFO : Status: created LVL2 GCT

14 Nov 2019 14:31:27,765 INFO : Checking status of job 5dcdd5976174be0019043f9a

14 Nov 2019 14:31:28,038 INFO : Status: created LVL2 GCT

14 Nov 2019 14:31:48,039 INFO : Checking status of job 5dcdd5976174be0019043f9a

14 Nov 2019 14:31:48,309 INFO : Status: created LVL2 GCT

14 Nov 2019 14:32:08,310 INFO : Checking status of job 5dcdd5976174be0019043f9a

14 Nov 2019 14:32:08,656 INFO : Status: created LVL2 GCT

14 Nov 2019 14:32:28,656 INFO : Checking status of job 5dcdd5976174be0019043f9a

14 Nov 2019 14:32:28,926 INFO : Status: created LVL2 GCT

14 Nov 2019 14:32:48,926 INFO : Checking status of job 5dcdd5976174be0019043f9a

14 Nov 2019 14:32:49,191 INFO : Status: created LVL2 GCT

14 Nov 2019 14:33:09,192 INFO : Checking status of job 5dcdd5976174be0019043f9a

14 Nov 2019 14:33:09,459 INFO : Status: created LVL2 GCT

14 Nov 2019 14:33:29,460 INFO : Checking status of job 5dcdd5976174be0019043f9a

14 Nov 2019 14:33:29,815 INFO : Status: created LVL2 GCT

14 Nov 2019 14:33:49,816 INFO : Checking status of job 5dcdd5976174be0019043f9a

14 Nov 2019 14:33:50,076 INFO : Status: created LVL2 GCT

14 Nov 2019 14:34:10,077 INFO : Checking status of job 5dcdd5976174be0019043f9a

14 Nov 2019 14:34:10,347 INFO : Status: created LVL2 GCT

14 Nov 2019 14:34:30,348 INFO : Checking status of job 5dcdd5976174be0019043f9a

14 Nov 2019 14:34:30,611 INFO : Status: created LVL 3 GCT

14 Nov 2019 14:34:50,612 INFO : Checking status of job 5dcdd5976174be0019043f9a

14 Nov 2019 14:34:50,967 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama

14 Nov 2019 14:34:50,967 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama

14 Nov 2019 14:34:50,968 INFO : Finished running LINCS PSP pipeline.

14 Nov 2019 14:34:50,968 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'

PanoramaWeb

PanoramaWeb

Re-running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14_15-28-26

Job Status

Log File