Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate84_annotated_minimized_2019-10-29_17-10-38

P100

Job Status

Created: 2019-10-29 14:14:11
Modified: 2020-06-01 16:07:27
Email: karen@broadinstitute.org
Status: ERROR
Info:
Description: Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate84_annotated_minimized_2019-10-29_17-10-38
File Path: /data/labkey/files/LINCS/P100/@files/LincsPSP_LINCS_P100_DIA_Plate84_annotated_minimized_2019-10-29_17-10-38_2019-10-29_14-14-11.log
Files: LincsPSP_LINCS_P100_DIA_Plate84_annotated_minimized_2019-10-29_17-10-38_2019-10-29_14-14-11.log

Log File


29 Oct 2019 14:14:11,649 INFO : Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate84_annotated_minimized_2019-10-29_17-10-38
29 Oct 2019 14:14:11,649 INFO : =======================================
29 Oct 2019 14:14:12,293 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
29 Oct 2019 14:14:12,294 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate84_annotated_minimized_2019-10-29_17-10-38
29 Oct 2019 14:14:12,294 INFO : Submitting job for runId: 77519, name: LINCS_P100_DIA_Plate84_annotated_minimized_2019-10-29_17-10-38
29 Oct 2019 14:14:12,295 INFO : Looking for existing job with name LINCS_P100_DIA_Plate84_annotated_minimized_2019-10-29_17-10-38
29 Oct 2019 14:14:12,642 INFO : PSP job name: LINCS_P100_DIA_Plate84_annotated_minimized_2019-10-29_17-10-38
29 Oct 2019 14:14:12,642 INFO : Sending JSON:
29 Oct 2019 14:14:12,642 INFO : { "level 4": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate84_annotated_minimized_2019-10-29_17-10-38_LVL4.gct" }}, "assay": "P100", "name": "LINCS_P100_DIA_Plate84_annotated_minimized_2019-10-29_17-10-38", "config": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate84_annotated_minimized_2019-10-29_17-10-38.cfg" }}, "level 2": {"panorama": { "method": "GET", "url": "https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=77519&remote=true&reportName=GCT%20File%20P100" }}, "level 3": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate84_annotated_minimized_2019-10-29_17-10-38_LVL3.gct" }} }
29 Oct 2019 14:14:12,643 INFO : Sending POST request to https://api.clue.io/api/psp
29 Oct 2019 14:14:12,869 INFO : Response code - 200
29 Oct 2019 14:14:12,869 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate84_annotated_minimized_2019-10-29_17-10-38","assay":"P100","status":"Waiting_To_Download","id":"5db8aba4d7148a00199289a2","created":"2019-10-29T21:14:12.704Z","last_modified":"2019-10-29T21:14:12.704Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=77519&remote=true&reportName=GCT%20File%20P100"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate84_annotated_minimized_2019-10-29_17-10-38_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate84_annotated_minimized_2019-10-29_17-10-38_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate84_annotated_minimized_2019-10-29_17-10-38.cfg"}}}
29 Oct 2019 14:14:12,869 INFO : Sent POST request to https://api.clue.io/api/psp
29 Oct 2019 14:14:12,871 INFO : Checking status of job 5db8aba4d7148a00199289a2
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29 Oct 2019 14:44:59,322 ERROR: Exceeded 30 minute wait time.
29 Oct 2019 14:44:59,411 INFO : Finished running LINCS PSP pipeline.
29 Oct 2019 14:44:59,411 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'