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Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_16-32-47

P100

Job Status

Created: 2019-10-29 13:41:52
Modified: 2020-06-01 16:07:27
Email: karen@broadinstitute.org
Status: ERROR
Info:
Description: Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_16-32-47
File Path: /data/labkey/files/LINCS/P100/@files/LincsPSP_LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_16-32-47_2019-10-29_13-41-51.log
Files: LincsPSP_LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_16-32-47_2019-10-29_13-41-51.log
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Log File


29 Oct 2019 13:41:51,759 INFO : Running LINCS pipeline on PSP for:  LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_16-32-47
29 Oct 2019 13:41:51,759 INFO : =======================================
29 Oct 2019 13:41:52,777 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
29 Oct 2019 13:41:52,778 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_16-32-47
29 Oct 2019 13:41:52,778 INFO : Submitting job for runId: 77518, name: LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_16-32-47
29 Oct 2019 13:41:52,780 INFO : Looking for existing job with name LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_16-32-47
29 Oct 2019 13:41:53,131 INFO : PSP job name: LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_16-32-47
29 Oct 2019 13:41:53,131 INFO : Sending JSON:
29 Oct 2019 13:41:53,132 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_16-32-47_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_16-32-47",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_16-32-47.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=77518&remote=true&reportName=GCT%20File%20P100"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_16-32-47_LVL3.gct"
  }}
}
29 Oct 2019 13:41:53,132 INFO : Sending POST request to https://api.clue.io/api/psp
29 Oct 2019 13:41:53,399 INFO : Response code - 200
29 Oct 2019 13:41:53,400 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_16-32-47","assay":"P100","status":"Waiting_To_Download","id":"5db8a411d7148a001992899a","created":"2019-10-29T20:41:53.189Z","last_modified":"2019-10-29T20:41:53.189Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=77518&remote=true&reportName=GCT%20File%20P100"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_16-32-47_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_16-32-47_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_16-32-47.cfg"}}}
29 Oct 2019 13:41:53,400 INFO : Sent POST request to https://api.clue.io/api/psp
29 Oct 2019 13:41:53,403 INFO : Checking status of job 5db8a411d7148a001992899a
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29 Oct 2019 14:12:39,869 ERROR: Exceeded 30 minute wait time.
29 Oct 2019 14:12:40,341 INFO : Finished running LINCS PSP pipeline.
29 Oct 2019 14:12:40,342 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'