Re-running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_11-57-12

P100

Job Status

Created: 2019-10-29 11:07:29
Modified: 2020-06-01 16:07:27
Email: vsharma@uw.edu
Status: ERROR
Info:
Description: Re-running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_11-57-12
File Path: /data/labkey/files/LINCS/P100/@files/LincsPSP_rerun_LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_11-57-12_2019-10-29_11-07-28.log
Files: LincsPSP_rerun_LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_11-57-12_2019-10-29_11-07-28.log

Log File


29 Oct 2019 11:07:28,870 INFO : Re-running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_11-57-12
29 Oct 2019 11:07:28,870 INFO : =======================================
29 Oct 2019 11:07:29,307 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
29 Oct 2019 11:07:29,308 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_11-57-12
29 Oct 2019 11:07:29,308 INFO : Resubmitting job for runId: 77504, name: LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_11-57-12
29 Oct 2019 11:07:29,308 INFO : Old job details:
29 Oct 2019 11:07:29,309 INFO : Id: 253
29 Oct 2019 11:07:29,309 INFO : Pipeline job Id: 78134
29 Oct 2019 11:07:29,309 INFO : Run Id: 77504
29 Oct 2019 11:07:29,310 INFO : PSP Job Id: 5db8633ed7148a0019928943
29 Oct 2019 11:07:29,310 INFO : PSP Job name: LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_11-57-12
29 Oct 2019 11:07:29,310 INFO : PSP Job status: Waiting_To_Download
29 Oct 2019 11:07:29,311 INFO : JSON: {"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_11-57-12_LVL4.gct"}},"assay":"P100","created":"2019-10-29T16:05:18.525Z","name":"LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_11-57-12","id":"5db8633ed7148a0019928943","last_modified":"2019-10-29T16:05:18.525Z","config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_11-57-12.cfg"}},"level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=77504&remote=true&reportName=GCT%20File%20P100"}},"status":"Waiting_To_Download","level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_11-57-12_LVL3.gct"}}}
29 Oct 2019 11:07:29,311 INFO : Resubmitting...
29 Oct 2019 11:07:29,314 INFO : Looking for existing job with name LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_11-57-12
29 Oct 2019 11:07:29,672 INFO : Job with name LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_11-57-12exists.
29 Oct 2019 11:07:29,673 INFO : Looking for existing job with name LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_11-57-12_2
29 Oct 2019 11:07:29,786 INFO : PSP job name: LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_11-57-12_2
29 Oct 2019 11:07:29,787 INFO : Sending JSON:
29 Oct 2019 11:07:29,787 INFO : { "level 4": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_11-57-12_LVL4.gct" }}, "assay": "P100", "name": "LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_11-57-12_2", "config": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_11-57-12.cfg" }}, "level 2": {"panorama": { "method": "GET", "url": "https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=77504&remote=true&reportName=GCT%20File%20P100" }}, "level 3": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_11-57-12_LVL3.gct" }} }
29 Oct 2019 11:07:29,788 INFO : Sending POST request to https://api.clue.io/api/psp
29 Oct 2019 11:07:30,027 INFO : Response code - 200
29 Oct 2019 11:07:30,027 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_11-57-12_2","assay":"P100","status":"Waiting_To_Download","id":"5db87fe1d7148a001992896a","created":"2019-10-29T18:07:29.848Z","last_modified":"2019-10-29T18:07:29.848Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=77504&remote=true&reportName=GCT%20File%20P100"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_11-57-12_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_11-57-12_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_11-57-12.cfg"}}}
29 Oct 2019 11:07:30,028 INFO : Sent POST request to https://api.clue.io/api/psp
29 Oct 2019 11:07:30,030 INFO : Checking status of job 5db87fe1d7148a001992896a
29 Oct 2019 11:07:30,143 INFO : Status: Waiting_To_Download
29 Oct 2019 11:07:50,144 INFO : Checking status of job 5db87fe1d7148a001992896a
29 Oct 2019 11:07:50,412 INFO : Status: created LVL2 GCT
29 Oct 2019 11:08:10,413 INFO : Checking status of job 5db87fe1d7148a001992896a
29 Oct 2019 11:08:10,685 INFO : Status: created LVL2 GCT
29 Oct 2019 11:08:30,686 INFO : Checking status of job 5db87fe1d7148a001992896a
29 Oct 2019 11:08:30,954 INFO : Status: created LVL2 GCT
29 Oct 2019 11:08:50,955 INFO : Checking status of job 5db87fe1d7148a001992896a
29 Oct 2019 11:08:51,308 INFO : Status: created LVL2 GCT
29 Oct 2019 11:09:11,309 INFO : Checking status of job 5db87fe1d7148a001992896a
29 Oct 2019 11:09:11,581 INFO : Status: created LVL2 GCT
29 Oct 2019 11:09:31,582 INFO : Checking status of job 5db87fe1d7148a001992896a
29 Oct 2019 11:09:31,860 INFO : Status: created LVL2 GCT
29 Oct 2019 11:09:51,861 INFO : Checking status of job 5db87fe1d7148a001992896a
29 Oct 2019 11:09:52,125 INFO : Status: created LVL2 GCT
29 Oct 2019 11:10:12,126 INFO : Checking status of job 5db87fe1d7148a001992896a
29 Oct 2019 11:10:12,472 INFO : Status: created LVL2 GCT
29 Oct 2019 11:10:32,473 INFO : Checking status of job 5db87fe1d7148a001992896a
29 Oct 2019 11:10:32,741 INFO : Status: created LVL2 GCT
29 Oct 2019 11:10:52,741 INFO : Checking status of job 5db87fe1d7148a001992896a
29 Oct 2019 11:10:53,010 INFO : Status: created LVL2 GCT
29 Oct 2019 11:11:13,010 INFO : Checking status of job 5db87fe1d7148a001992896a
29 Oct 2019 11:11:13,278 INFO : Status: created LVL2 GCT
29 Oct 2019 11:11:33,279 INFO : Checking status of job 5db87fe1d7148a001992896a
29 Oct 2019 11:11:33,649 INFO : Status: created LVL 3 GCT
29 Oct 2019 11:11:53,649 INFO : Checking status of job 5db87fe1d7148a001992896a
29 Oct 2019 11:11:53,913 INFO : Status: created LVL 3 GCT
29 Oct 2019 11:11:53,948 ERROR: Error in PSP job. Error: level 4: tear error: Row_meta_df does not have the row_subset_field: pr_probe_normalization_group.
29 Oct 2019 11:11:54,579 INFO : Finished running LINCS PSP pipeline.
29 Oct 2019 11:11:54,579 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'