Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_11-57-12

P100

Job Status

Created: 2019-10-29 09:05:16
Modified: 2020-06-01 16:07:27
Email: karen@broadinstitute.org
Status: ERROR
Info:
Description: Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_11-57-12
File Path: /data/labkey/files/LINCS/P100/@files/LincsPSP_LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_11-57-12_2019-10-29_09-05-16.log
Files: LincsPSP_LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_11-57-12_2019-10-29_09-05-16.log

Log File


29 Oct 2019 09:05:16,659 INFO : Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_11-57-12
29 Oct 2019 09:05:16,659 INFO : =======================================
29 Oct 2019 09:05:18,099 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
29 Oct 2019 09:05:18,099 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_11-57-12
29 Oct 2019 09:05:18,099 INFO : Submitting job for runId: 77504, name: LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_11-57-12
29 Oct 2019 09:05:18,101 INFO : Looking for existing job with name LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_11-57-12
29 Oct 2019 09:05:18,461 INFO : PSP job name: LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_11-57-12
29 Oct 2019 09:05:18,462 INFO : Sending JSON:
29 Oct 2019 09:05:18,462 INFO : { "level 4": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_11-57-12_LVL4.gct" }}, "assay": "P100", "name": "LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_11-57-12", "config": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_11-57-12.cfg" }}, "level 2": {"panorama": { "method": "GET", "url": "https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=77504&remote=true&reportName=GCT%20File%20P100" }}, "level 3": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_11-57-12_LVL3.gct" }} }
29 Oct 2019 09:05:18,462 INFO : Sending POST request to https://api.clue.io/api/psp
29 Oct 2019 09:05:18,716 INFO : Response code - 200
29 Oct 2019 09:05:18,717 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_11-57-12","assay":"P100","status":"Waiting_To_Download","id":"5db8633ed7148a0019928943","created":"2019-10-29T16:05:18.525Z","last_modified":"2019-10-29T16:05:18.525Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=77504&remote=true&reportName=GCT%20File%20P100"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_11-57-12_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_11-57-12_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-29_11-57-12.cfg"}}}
29 Oct 2019 09:05:18,717 INFO : Sent POST request to https://api.clue.io/api/psp
29 Oct 2019 09:05:18,719 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:05:18,833 INFO : Status: Waiting_To_Download
29 Oct 2019 09:05:38,834 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:05:39,103 INFO : Status: Waiting_To_Download
29 Oct 2019 09:05:59,104 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:05:59,366 INFO : Status: Waiting_To_Download
29 Oct 2019 09:06:19,366 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:06:19,638 INFO : Status: Waiting_To_Download
29 Oct 2019 09:06:39,639 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:06:39,986 INFO : Status: Waiting_To_Download
29 Oct 2019 09:06:59,987 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:07:00,254 INFO : Status: Waiting_To_Download
29 Oct 2019 09:07:20,255 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:07:20,538 INFO : Status: Waiting_To_Download
29 Oct 2019 09:07:40,538 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:07:40,798 INFO : Status: Waiting_To_Download
29 Oct 2019 09:08:00,799 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:08:01,067 INFO : Status: Waiting_To_Download
29 Oct 2019 09:08:21,068 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:08:21,329 INFO : Status: Waiting_To_Download
29 Oct 2019 09:08:41,330 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:08:41,602 INFO : Status: Waiting_To_Download
29 Oct 2019 09:09:01,603 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:09:01,873 INFO : Status: Waiting_To_Download
29 Oct 2019 09:09:21,873 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:09:22,218 INFO : Status: Waiting_To_Download
29 Oct 2019 09:09:42,218 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:09:42,488 INFO : Status: Waiting_To_Download
29 Oct 2019 09:10:02,488 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:10:03,340 INFO : Status: Waiting_To_Download
29 Oct 2019 09:10:23,340 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:10:23,610 INFO : Status: Waiting_To_Download
29 Oct 2019 09:10:43,610 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:10:43,871 INFO : Status: Waiting_To_Download
29 Oct 2019 09:11:03,872 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:11:04,138 INFO : Status: Waiting_To_Download
29 Oct 2019 09:11:24,139 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:11:24,486 INFO : Status: Waiting_To_Download
29 Oct 2019 09:11:44,487 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:11:44,755 INFO : Status: Waiting_To_Download
29 Oct 2019 09:12:04,756 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:12:05,017 INFO : Status: Waiting_To_Download
29 Oct 2019 09:12:25,018 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:12:25,287 INFO : Status: Waiting_To_Download
29 Oct 2019 09:12:45,288 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:12:45,640 INFO : Status: Waiting_To_Download
29 Oct 2019 09:13:05,640 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:13:05,899 INFO : Status: Waiting_To_Download
29 Oct 2019 09:13:25,899 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:13:26,168 INFO : Status: Waiting_To_Download
29 Oct 2019 09:13:46,169 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:13:46,431 INFO : Status: Waiting_To_Download
29 Oct 2019 09:14:06,432 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:14:06,790 INFO : Status: Waiting_To_Download
29 Oct 2019 09:14:26,791 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:14:27,058 INFO : Status: Waiting_To_Download
29 Oct 2019 09:14:47,058 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:14:47,331 INFO : Status: Waiting_To_Download
29 Oct 2019 09:15:07,332 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:15:07,599 INFO : Status: Waiting_To_Download
29 Oct 2019 09:15:27,600 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:15:27,955 INFO : Status: Waiting_To_Download
29 Oct 2019 09:15:47,956 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:15:48,220 INFO : Status: Waiting_To_Download
29 Oct 2019 09:16:08,221 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:16:08,495 INFO : Status: Waiting_To_Download
29 Oct 2019 09:16:28,495 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:16:28,756 INFO : Status: Waiting_To_Download
29 Oct 2019 09:16:48,757 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:16:49,024 INFO : Status: Waiting_To_Download
29 Oct 2019 09:17:09,025 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:17:09,292 INFO : Status: Waiting_To_Download
29 Oct 2019 09:17:29,293 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:17:29,641 INFO : Status: Waiting_To_Download
29 Oct 2019 09:17:49,642 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:17:49,903 INFO : Status: Waiting_To_Download
29 Oct 2019 09:18:09,903 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:18:10,164 INFO : Status: Waiting_To_Download
29 Oct 2019 09:18:30,164 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:18:30,425 INFO : Status: Waiting_To_Download
29 Oct 2019 09:18:50,426 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:18:50,685 INFO : Status: Waiting_To_Download
29 Oct 2019 09:19:10,685 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:19:10,943 INFO : Status: Waiting_To_Download
29 Oct 2019 09:19:30,944 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:19:31,262 INFO : Status: Waiting_To_Download
29 Oct 2019 09:19:51,263 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:19:51,532 INFO : Status: Waiting_To_Download
29 Oct 2019 09:20:11,532 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:20:11,873 INFO : Status: Waiting_To_Download
29 Oct 2019 09:20:31,873 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:20:32,134 INFO : Status: Waiting_To_Download
29 Oct 2019 09:20:52,134 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:20:52,413 INFO : Status: Waiting_To_Download
29 Oct 2019 09:21:12,414 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:21:12,673 INFO : Status: Waiting_To_Download
29 Oct 2019 09:21:32,674 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:21:33,025 INFO : Status: Waiting_To_Download
29 Oct 2019 09:21:53,025 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:21:53,303 INFO : Status: Waiting_To_Download
29 Oct 2019 09:22:13,304 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:22:13,564 INFO : Status: Waiting_To_Download
29 Oct 2019 09:22:33,565 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:22:33,824 INFO : Status: Waiting_To_Download
29 Oct 2019 09:22:53,825 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:22:54,169 INFO : Status: Waiting_To_Download
29 Oct 2019 09:23:14,169 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:23:14,431 INFO : Status: Waiting_To_Download
29 Oct 2019 09:23:34,431 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:23:34,768 INFO : Status: Waiting_To_Download
29 Oct 2019 09:23:54,769 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:23:55,044 INFO : Status: Waiting_To_Download
29 Oct 2019 09:24:15,045 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:24:15,309 INFO : Status: Waiting_To_Download
29 Oct 2019 09:24:35,310 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:24:35,570 INFO : Status: Waiting_To_Download
29 Oct 2019 09:24:55,571 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:24:55,923 INFO : Status: Waiting_To_Download
29 Oct 2019 09:25:15,923 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:25:16,180 INFO : Status: Waiting_To_Download
29 Oct 2019 09:25:36,180 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:25:36,443 INFO : Status: Waiting_To_Download
29 Oct 2019 09:25:56,444 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:25:56,804 INFO : Status: Waiting_To_Download
29 Oct 2019 09:26:16,804 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:26:17,154 INFO : Status: Waiting_To_Download
29 Oct 2019 09:26:37,155 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:26:37,421 INFO : Status: Waiting_To_Download
29 Oct 2019 09:26:57,421 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:26:57,684 INFO : Status: Waiting_To_Download
29 Oct 2019 09:27:17,684 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:27:17,941 INFO : Status: Waiting_To_Download
29 Oct 2019 09:27:37,942 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:27:38,282 INFO : Status: Waiting_To_Download
29 Oct 2019 09:27:58,282 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:27:58,552 INFO : Status: Waiting_To_Download
29 Oct 2019 09:28:18,553 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:28:18,823 INFO : Status: Waiting_To_Download
29 Oct 2019 09:28:38,823 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:28:39,079 INFO : Status: Waiting_To_Download
29 Oct 2019 09:28:59,079 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:28:59,419 INFO : Status: Waiting_To_Download
29 Oct 2019 09:29:19,420 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:29:19,692 INFO : Status: Waiting_To_Download
29 Oct 2019 09:29:39,693 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:29:39,956 INFO : Status: Waiting_To_Download
29 Oct 2019 09:29:59,956 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:30:00,217 INFO : Status: Waiting_To_Download
29 Oct 2019 09:30:20,218 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:30:20,486 INFO : Status: Waiting_To_Download
29 Oct 2019 09:30:40,486 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:30:40,760 INFO : Status: Waiting_To_Download
29 Oct 2019 09:31:00,761 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:31:01,104 INFO : Status: Waiting_To_Download
29 Oct 2019 09:31:21,105 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:31:21,366 INFO : Status: Waiting_To_Download
29 Oct 2019 09:31:41,367 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:31:41,627 INFO : Status: Waiting_To_Download
29 Oct 2019 09:32:01,628 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:32:01,900 INFO : Status: Waiting_To_Download
29 Oct 2019 09:32:21,900 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:32:22,237 INFO : Status: Waiting_To_Download
29 Oct 2019 09:32:42,237 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:32:42,498 INFO : Status: Waiting_To_Download
29 Oct 2019 09:33:02,499 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:33:02,759 INFO : Status: Waiting_To_Download
29 Oct 2019 09:33:22,760 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:33:23,017 INFO : Status: Waiting_To_Download
29 Oct 2019 09:33:43,018 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:33:43,366 INFO : Status: Waiting_To_Download
29 Oct 2019 09:34:03,367 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:34:03,631 INFO : Status: Waiting_To_Download
29 Oct 2019 09:34:23,631 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:34:23,904 INFO : Status: Waiting_To_Download
29 Oct 2019 09:34:43,904 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:34:44,172 INFO : Status: Waiting_To_Download
29 Oct 2019 09:35:04,173 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:35:04,518 INFO : Status: Waiting_To_Download
29 Oct 2019 09:35:24,518 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:35:24,784 INFO : Status: Waiting_To_Download
29 Oct 2019 09:35:44,785 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:35:45,048 INFO : Status: Waiting_To_Download
29 Oct 2019 09:36:05,049 INFO : Checking status of job 5db8633ed7148a0019928943
29 Oct 2019 09:36:05,321 INFO : Status: Waiting_To_Download
29 Oct 2019 09:36:05,361 ERROR: Exceeded 30 minute wait time.
29 Oct 2019 09:36:06,175 INFO : Finished running LINCS PSP pipeline.
29 Oct 2019 09:36:06,175 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'