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Re-running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-25_15-39-48

P100

Job Status

Created: 2019-10-25 15:44:25
Modified: 2020-06-01 16:07:27
Email: vsharma@uw.edu
Status: ERROR
Info:
Description: Re-running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-25_15-39-48
File Path: /data/labkey/files/LINCS/P100/@files/LincsPSP_rerun_LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-25_15-39-48_2019-10-25_15-44-24.log
Files: LincsPSP_rerun_LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-25_15-39-48_2019-10-25_15-44-24.log
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Log File


25 Oct 2019 15:44:25,088 INFO : Re-running LINCS pipeline on PSP for:  LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-25_15-39-48
25 Oct 2019 15:44:25,088 INFO : =======================================
25 Oct 2019 15:44:25,600 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
25 Oct 2019 15:44:25,601 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-25_15-39-48
25 Oct 2019 15:44:25,601 INFO : Resubmitting job for runId: 77304, name: LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-25_15-39-48
25 Oct 2019 15:44:25,601 INFO : Old job details: 
25 Oct 2019 15:44:25,601 INFO : Id: 251
25 Oct 2019 15:44:25,601 INFO : Pipeline job Id: 77933
25 Oct 2019 15:44:25,601 INFO : Run Id: 77304
25 Oct 2019 15:44:25,602 INFO : PSP Job Id: 5db35345d7148a00199284fe
25 Oct 2019 15:44:25,602 INFO : PSP Job name: LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-25_15-39-48
25 Oct 2019 15:44:25,602 INFO : PSP Job status: Waiting_To_Download
25 Oct 2019 15:44:25,602 INFO : JSON: {"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-25_15-39-48_LVL4.gct"}},"assay":"P100","created":"2019-10-25T19:55:49.335Z","name":"LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-25_15-39-48","id":"5db35345d7148a00199284fe","last_modified":"2019-10-25T19:55:49.335Z","config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-25_15-39-48.cfg"}},"level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=77304&remote=true&reportName=GCT%20File%20P100"}},"status":"Waiting_To_Download","level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-25_15-39-48_LVL3.gct"}}}
25 Oct 2019 15:44:25,602 INFO : Resubmitting...
25 Oct 2019 15:44:25,604 INFO : Looking for existing job with name LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-25_15-39-48
25 Oct 2019 15:44:25,893 INFO : Job with name LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-25_15-39-48exists.
25 Oct 2019 15:44:25,894 INFO : Looking for existing job with name LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-25_15-39-48_2
25 Oct 2019 15:44:26,004 INFO : PSP job name: LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-25_15-39-48_2
25 Oct 2019 15:44:26,005 INFO : Sending JSON:
25 Oct 2019 15:44:26,005 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-25_15-39-48_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-25_15-39-48_2",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-25_15-39-48.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=77304&remote=true&reportName=GCT%20File%20P100"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-25_15-39-48_LVL3.gct"
  }}
}
25 Oct 2019 15:44:26,021 INFO : Sending POST request to https://api.clue.io/api/psp
25 Oct 2019 15:44:26,209 INFO : Response code - 200
25 Oct 2019 15:44:26,210 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-25_15-39-48_2","assay":"P100","status":"Waiting_To_Download","id":"5db37acad7148a0019928522","created":"2019-10-25T22:44:26.080Z","last_modified":"2019-10-25T22:44:26.080Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=77304&remote=true&reportName=GCT%20File%20P100"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-25_15-39-48_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-25_15-39-48_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate18_annotated_minimized_2019-10-25_15-39-48.cfg"}}}
25 Oct 2019 15:44:26,210 INFO : Sent POST request to https://api.clue.io/api/psp
25 Oct 2019 15:44:26,212 INFO : Checking status of job 5db37acad7148a0019928522
25 Oct 2019 15:44:26,322 INFO : Status: Waiting_To_Download
25 Oct 2019 15:44:46,323 INFO : Checking status of job 5db37acad7148a0019928522
25 Oct 2019 15:44:46,621 INFO : Status: created LVL2 GCT
25 Oct 2019 15:45:06,622 INFO : Checking status of job 5db37acad7148a0019928522
25 Oct 2019 15:45:06,877 INFO : Status: created LVL2 GCT
25 Oct 2019 15:45:26,878 INFO : Checking status of job 5db37acad7148a0019928522
25 Oct 2019 15:45:27,142 INFO : Status: created LVL2 GCT
25 Oct 2019 15:45:47,143 INFO : Checking status of job 5db37acad7148a0019928522
25 Oct 2019 15:45:47,495 INFO : Status: created LVL2 GCT
25 Oct 2019 15:46:07,495 INFO : Checking status of job 5db37acad7148a0019928522
25 Oct 2019 15:46:07,764 INFO : Status: created LVL2 GCT
25 Oct 2019 15:46:27,765 INFO : Checking status of job 5db37acad7148a0019928522
25 Oct 2019 15:46:28,029 INFO : Status: created LVL2 GCT
25 Oct 2019 15:46:48,030 INFO : Checking status of job 5db37acad7148a0019928522
25 Oct 2019 15:46:48,298 INFO : Status: created LVL2 GCT
25 Oct 2019 15:47:08,299 INFO : Checking status of job 5db37acad7148a0019928522
25 Oct 2019 15:47:08,645 INFO : Status: created LVL2 GCT
25 Oct 2019 15:47:28,646 INFO : Checking status of job 5db37acad7148a0019928522
25 Oct 2019 15:47:28,907 INFO : Status: created LVL2 GCT
25 Oct 2019 15:47:48,907 INFO : Checking status of job 5db37acad7148a0019928522
25 Oct 2019 15:47:49,180 INFO : Status: created LVL2 GCT
25 Oct 2019 15:48:09,180 INFO : Checking status of job 5db37acad7148a0019928522
25 Oct 2019 15:48:09,442 INFO : Status: created LVL2 GCT
25 Oct 2019 15:48:09,443 ERROR: Error in PSP job. Error: level 3: dry error: 'the label [pr_probe_suitability_manual] is not in the [columns]'
25 Oct 2019 15:48:09,918 INFO : Finished running LINCS PSP pipeline.
25 Oct 2019 15:48:09,918 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'