Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate65_annotated_minimized_2019-10-21_16-54-32

P100

Job Status

Created: 2019-10-21 14:04:26
Modified: 2020-06-01 16:07:27
Email: karen@broadinstitute.org
Status: ERROR
Info:
Description: Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate65_annotated_minimized_2019-10-21_16-54-32
File Path: /data/labkey/files/LINCS/P100/@files/LincsPSP_LINCS_P100_DIA_Plate65_annotated_minimized_2019-10-21_16-54-32_2019-10-21_14-04-25.log
Files: LincsPSP_LINCS_P100_DIA_Plate65_annotated_minimized_2019-10-21_16-54-32_2019-10-21_14-04-25.log

Log File


21 Oct 2019 14:04:26,084 INFO : Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate65_annotated_minimized_2019-10-21_16-54-32
21 Oct 2019 14:04:26,085 INFO : =======================================
21 Oct 2019 14:05:01,083 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
21 Oct 2019 14:05:01,084 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate65_annotated_minimized_2019-10-21_16-54-32
21 Oct 2019 14:05:01,088 INFO : Submitting job for runId: 77013, name: LINCS_P100_DIA_Plate65_annotated_minimized_2019-10-21_16-54-32
21 Oct 2019 14:05:01,091 INFO : Looking for existing job with name LINCS_P100_DIA_Plate65_annotated_minimized_2019-10-21_16-54-32
21 Oct 2019 14:05:01,661 INFO : PSP job name: LINCS_P100_DIA_Plate65_annotated_minimized_2019-10-21_16-54-32
21 Oct 2019 14:05:01,663 INFO : Sending JSON:
21 Oct 2019 14:05:01,664 INFO : { "level 4": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate65_annotated_minimized_2019-10-21_16-54-32_LVL4.gct" }}, "assay": "P100", "name": "LINCS_P100_DIA_Plate65_annotated_minimized_2019-10-21_16-54-32", "config": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate65_annotated_minimized_2019-10-21_16-54-32.cfg" }}, "level 2": {"panorama": { "method": "GET", "url": "https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=77013&remote=true&reportName=GCT%20File%20P100" }}, "level 3": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate65_annotated_minimized_2019-10-21_16-54-32_LVL3.gct" }} }
21 Oct 2019 14:05:01,665 INFO : Sending POST request to https://api.clue.io/api/psp
21 Oct 2019 14:05:01,868 INFO : Response code - 200
21 Oct 2019 14:05:01,869 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate65_annotated_minimized_2019-10-21_16-54-32","assay":"P100","status":"Waiting_To_Download","id":"5dae1d7dd7148a0019927f74","created":"2019-10-21T21:05:01.729Z","last_modified":"2019-10-21T21:05:01.729Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=77013&remote=true&reportName=GCT%20File%20P100"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate65_annotated_minimized_2019-10-21_16-54-32_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate65_annotated_minimized_2019-10-21_16-54-32_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate65_annotated_minimized_2019-10-21_16-54-32.cfg"}}}
21 Oct 2019 14:05:01,874 INFO : Sent POST request to https://api.clue.io/api/psp
21 Oct 2019 14:05:01,876 INFO : Checking status of job 5dae1d7dd7148a0019927f74
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21 Oct 2019 14:35:49,228 ERROR: Exceeded 30 minute wait time.
21 Oct 2019 14:35:49,866 INFO : Finished running LINCS PSP pipeline.
21 Oct 2019 14:35:49,867 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'