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Re-running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-18_11-33-20

P100

Job Status

Created: 2019-10-18 10:10:21
Modified: 2020-06-01 16:07:27
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Re-running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-18_11-33-20
File Path: /data/labkey/files/LINCS/P100/@files/LincsPSP_rerun_LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-18_11-33-20_2019-10-18_10-10-20.log
Files: LincsPSP_rerun_LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-18_11-33-20_2019-10-18_10-10-20.log
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Log File


18 Oct 2019 10:10:20,940 INFO : Re-running LINCS pipeline on PSP for:  LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-18_11-33-20
18 Oct 2019 10:10:20,941 INFO : =======================================
18 Oct 2019 10:10:21,313 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
18 Oct 2019 10:10:21,314 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-18_11-33-20
18 Oct 2019 10:10:21,314 INFO : Resubmitting job for runId: 76924, name: LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-18_11-33-20
18 Oct 2019 10:10:21,314 INFO : Old job details: 
18 Oct 2019 10:10:21,315 INFO : Id: 246
18 Oct 2019 10:10:21,315 INFO : Pipeline job Id: 77539
18 Oct 2019 10:10:21,315 INFO : Run Id: 76924
18 Oct 2019 10:10:21,316 INFO : PSP Job Id: 5da9def0d7148a0019927d35
18 Oct 2019 10:10:21,316 INFO : PSP Job name: LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-18_11-33-20
18 Oct 2019 10:10:21,316 INFO : PSP Job status: Waiting_To_Download
18 Oct 2019 10:10:21,317 INFO : JSON: {"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-18_11-33-20_LVL4.gct"}},"assay":"P100","created":"2019-10-18T15:49:04.989Z","name":"LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-18_11-33-20","id":"5da9def0d7148a0019927d35","last_modified":"2019-10-18T15:49:04.989Z","config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-18_11-33-20.cfg"}},"level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=76924&remote=true&reportName=GCT%20File%20P100"}},"status":"Waiting_To_Download","level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-18_11-33-20_LVL3.gct"}}}
18 Oct 2019 10:10:21,317 INFO : Resubmitting...
18 Oct 2019 10:10:21,319 INFO : Looking for existing job with name LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-18_11-33-20
18 Oct 2019 10:10:21,654 INFO : Job with name LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-18_11-33-20exists.
18 Oct 2019 10:10:21,655 INFO : Looking for existing job with name LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-18_11-33-20_2
18 Oct 2019 10:10:21,755 INFO : PSP job name: LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-18_11-33-20_2
18 Oct 2019 10:10:21,756 INFO : Sending JSON:
18 Oct 2019 10:10:21,756 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-18_11-33-20_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-18_11-33-20_2",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-18_11-33-20.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=76924&remote=true&reportName=GCT%20File%20P100"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-18_11-33-20_LVL3.gct"
  }}
}
18 Oct 2019 10:10:21,757 INFO : Sending POST request to https://api.clue.io/api/psp
18 Oct 2019 10:10:21,919 INFO : Response code - 200
18 Oct 2019 10:10:21,919 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-18_11-33-20_2","assay":"P100","status":"Waiting_To_Download","id":"5da9f1fdd7148a0019927d43","created":"2019-10-18T17:10:21.818Z","last_modified":"2019-10-18T17:10:21.818Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=76924&remote=true&reportName=GCT%20File%20P100"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-18_11-33-20_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-18_11-33-20_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-18_11-33-20.cfg"}}}
18 Oct 2019 10:10:21,920 INFO : Sent POST request to https://api.clue.io/api/psp
18 Oct 2019 10:10:21,923 INFO : Checking status of job 5da9f1fdd7148a0019927d43
18 Oct 2019 10:10:22,024 INFO : Status: Waiting_To_Download
18 Oct 2019 10:10:42,025 INFO : Checking status of job 5da9f1fdd7148a0019927d43
18 Oct 2019 10:10:42,274 INFO : Status: created LVL2 GCT
18 Oct 2019 10:11:02,275 INFO : Checking status of job 5da9f1fdd7148a0019927d43
18 Oct 2019 10:11:02,524 INFO : Status: created LVL2 GCT
18 Oct 2019 10:11:22,525 INFO : Checking status of job 5da9f1fdd7148a0019927d43
18 Oct 2019 10:11:22,774 INFO : Status: created LVL2 GCT
18 Oct 2019 10:11:42,775 INFO : Checking status of job 5da9f1fdd7148a0019927d43
18 Oct 2019 10:11:43,103 INFO : Status: created LVL2 GCT
18 Oct 2019 10:12:03,104 INFO : Checking status of job 5da9f1fdd7148a0019927d43
18 Oct 2019 10:12:03,352 INFO : Status: created LVL2 GCT
18 Oct 2019 10:12:23,353 INFO : Checking status of job 5da9f1fdd7148a0019927d43
18 Oct 2019 10:12:23,605 INFO : Status: created LVL2 GCT
18 Oct 2019 10:12:43,605 INFO : Checking status of job 5da9f1fdd7148a0019927d43
18 Oct 2019 10:12:43,854 INFO : Status: created LVL2 GCT
18 Oct 2019 10:13:03,855 INFO : Checking status of job 5da9f1fdd7148a0019927d43
18 Oct 2019 10:13:04,109 INFO : Status: created LVL2 GCT
18 Oct 2019 10:13:24,110 INFO : Checking status of job 5da9f1fdd7148a0019927d43
18 Oct 2019 10:13:24,363 INFO : Status: created LVL2 GCT
18 Oct 2019 10:13:44,364 INFO : Checking status of job 5da9f1fdd7148a0019927d43
18 Oct 2019 10:13:44,614 INFO : Status: created LVL2 GCT
18 Oct 2019 10:14:04,615 INFO : Checking status of job 5da9f1fdd7148a0019927d43
18 Oct 2019 10:14:04,867 INFO : Status: created LVL 4 GCT
18 Oct 2019 10:14:24,867 INFO : Checking status of job 5da9f1fdd7148a0019927d43
18 Oct 2019 10:14:25,272 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
18 Oct 2019 10:14:25,272 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
18 Oct 2019 10:14:25,272 INFO : Finished running LINCS PSP pipeline.
18 Oct 2019 10:14:25,273 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'