Re-running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_17-20-37

P100

Job Status

Created: 2019-10-17 16:49:27
Modified: 2020-06-01 16:07:27
Email: vsharma@uw.edu
Status: ERROR
Info:
Description: Re-running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_17-20-37
File Path: /data/labkey/files/LINCS/P100/@files/LincsPSP_rerun_LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_17-20-37_2019-10-17_16-49-26.log
Files: LincsPSP_rerun_LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_17-20-37_2019-10-17_16-49-26.log

Log File


17 Oct 2019 16:49:27,298 INFO : Re-running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_17-20-37
17 Oct 2019 16:49:27,299 INFO : =======================================
17 Oct 2019 16:54:38,705 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
17 Oct 2019 16:54:38,706 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_17-20-37
17 Oct 2019 16:54:38,706 INFO : Resubmitting job for runId: 76858, name: LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_17-20-37
17 Oct 2019 16:54:38,707 INFO : Old job details:
17 Oct 2019 16:54:38,707 INFO : Id: 244
17 Oct 2019 16:54:38,707 INFO : Pipeline job Id: 77470
17 Oct 2019 16:54:38,708 INFO : Run Id: 76858
17 Oct 2019 16:54:38,708 INFO : PSP Job Id: 5da8dd4ad7148a0019927caa
17 Oct 2019 16:54:38,708 INFO : PSP Job name: LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_17-20-37
17 Oct 2019 16:54:38,708 INFO : PSP Job status: Waiting_To_Download
17 Oct 2019 16:54:38,709 INFO : JSON: {"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_17-20-37_LVL4.gct"}},"assay":"P100","created":"2019-10-17T21:29:46.080Z","name":"LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_17-20-37","id":"5da8dd4ad7148a0019927caa","last_modified":"2019-10-17T21:29:46.080Z","config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_17-20-37.cfg"}},"level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=76858&remote=true&reportName=GCT%20File%20P100"}},"status":"Waiting_To_Download","level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_17-20-37_LVL3.gct"}}}
17 Oct 2019 16:54:38,709 INFO : Resubmitting...
17 Oct 2019 16:54:38,712 INFO : Looking for existing job with name LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_17-20-37
17 Oct 2019 16:54:39,093 INFO : Job with name LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_17-20-37exists.
17 Oct 2019 16:54:39,094 INFO : Looking for existing job with name LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_17-20-37_2
17 Oct 2019 16:54:39,197 INFO : PSP job name: LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_17-20-37_2
17 Oct 2019 16:54:39,198 INFO : Sending JSON:
17 Oct 2019 16:54:39,198 INFO : { "level 4": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_17-20-37_LVL4.gct" }}, "assay": "P100", "name": "LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_17-20-37_2", "config": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_17-20-37.cfg" }}, "level 2": {"panorama": { "method": "GET", "url": "https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=76858&remote=true&reportName=GCT%20File%20P100" }}, "level 3": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_17-20-37_LVL3.gct" }} }
17 Oct 2019 16:54:39,199 INFO : Sending POST request to https://api.clue.io/api/psp
17 Oct 2019 16:54:39,366 INFO : Response code - 200
17 Oct 2019 16:54:39,366 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_17-20-37_2","assay":"P100","status":"Waiting_To_Download","id":"5da8ff3fd7148a0019927cb6","created":"2019-10-17T23:54:39.263Z","last_modified":"2019-10-17T23:54:39.263Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=76858&remote=true&reportName=GCT%20File%20P100"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_17-20-37_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_17-20-37_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_17-20-37.cfg"}}}
17 Oct 2019 16:54:39,367 INFO : Sent POST request to https://api.clue.io/api/psp
17 Oct 2019 16:54:39,369 INFO : Checking status of job 5da8ff3fd7148a0019927cb6
17 Oct 2019 16:54:39,480 INFO : Status: Waiting_To_Download
17 Oct 2019 16:54:59,480 INFO : Checking status of job 5da8ff3fd7148a0019927cb6
17 Oct 2019 16:54:59,731 INFO : Status: created LVL2 GCT
17 Oct 2019 16:55:19,732 INFO : Checking status of job 5da8ff3fd7148a0019927cb6
17 Oct 2019 16:55:19,993 INFO : Status: created LVL2 GCT
17 Oct 2019 16:55:39,994 INFO : Checking status of job 5da8ff3fd7148a0019927cb6
17 Oct 2019 16:55:40,246 INFO : Status: created LVL2 GCT
17 Oct 2019 16:56:00,247 INFO : Checking status of job 5da8ff3fd7148a0019927cb6
17 Oct 2019 16:56:00,534 INFO : Status: created LVL2 GCT
17 Oct 2019 16:56:20,535 INFO : Checking status of job 5da8ff3fd7148a0019927cb6
17 Oct 2019 16:56:20,789 INFO : Status: created LVL2 GCT
17 Oct 2019 16:56:40,789 INFO : Checking status of job 5da8ff3fd7148a0019927cb6
17 Oct 2019 16:56:41,041 INFO : Status: created LVL2 GCT
17 Oct 2019 16:57:01,042 INFO : Checking status of job 5da8ff3fd7148a0019927cb6
17 Oct 2019 16:57:01,291 INFO : Status: created LVL2 GCT
17 Oct 2019 16:57:21,292 INFO : Checking status of job 5da8ff3fd7148a0019927cb6
17 Oct 2019 16:57:21,542 INFO : Status: created LVL2 GCT
17 Oct 2019 16:57:41,543 INFO : Checking status of job 5da8ff3fd7148a0019927cb6
17 Oct 2019 16:57:41,789 INFO : Status: created LVL2 GCT
17 Oct 2019 16:58:01,790 INFO : Checking status of job 5da8ff3fd7148a0019927cb6
17 Oct 2019 16:58:02,041 INFO : Status: created LVL2 GCT
17 Oct 2019 16:58:22,042 INFO : Checking status of job 5da8ff3fd7148a0019927cb6
17 Oct 2019 16:58:22,292 INFO : Status: created LVL2 GCT
17 Oct 2019 16:58:22,309 ERROR: Error in PSP job. Error: level 3: dry error: All samples were filtered out. Try reducing the threshold.
17 Oct 2019 16:58:22,706 INFO : Finished running LINCS PSP pipeline.
17 Oct 2019 16:58:22,707 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'