Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_17-20-37

P100

Job Status

Created: 2019-10-17 14:29:44
Modified: 2020-06-01 16:07:27
Email: karen@broadinstitute.org
Status: ERROR
Info:
Description: Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_17-20-37
File Path: /data/labkey/files/LINCS/P100/@files/LincsPSP_LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_17-20-37_2019-10-17_14-29-44.log
Files: LincsPSP_LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_17-20-37_2019-10-17_14-29-44.log

Log File


17 Oct 2019 14:29:44,875 INFO : Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_17-20-37
17 Oct 2019 14:29:44,875 INFO : =======================================
17 Oct 2019 14:29:45,671 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
17 Oct 2019 14:29:45,672 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_17-20-37
17 Oct 2019 14:29:45,672 INFO : Submitting job for runId: 76858, name: LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_17-20-37
17 Oct 2019 14:29:45,675 INFO : Looking for existing job with name LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_17-20-37
17 Oct 2019 14:29:46,013 INFO : PSP job name: LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_17-20-37
17 Oct 2019 14:29:46,014 INFO : Sending JSON:
17 Oct 2019 14:29:46,015 INFO : { "level 4": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_17-20-37_LVL4.gct" }}, "assay": "P100", "name": "LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_17-20-37", "config": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_17-20-37.cfg" }}, "level 2": {"panorama": { "method": "GET", "url": "https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=76858&remote=true&reportName=GCT%20File%20P100" }}, "level 3": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_17-20-37_LVL3.gct" }} }
17 Oct 2019 14:29:46,016 INFO : Sending POST request to https://api.clue.io/api/psp
17 Oct 2019 14:29:46,191 INFO : Response code - 200
17 Oct 2019 14:29:46,191 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_17-20-37","assay":"P100","status":"Waiting_To_Download","id":"5da8dd4ad7148a0019927caa","created":"2019-10-17T21:29:46.080Z","last_modified":"2019-10-17T21:29:46.080Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=76858&remote=true&reportName=GCT%20File%20P100"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_17-20-37_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_17-20-37_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_17-20-37.cfg"}}}
17 Oct 2019 14:29:46,191 INFO : Sent POST request to https://api.clue.io/api/psp
17 Oct 2019 14:29:46,194 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:29:46,302 INFO : Status: Waiting_To_Download
17 Oct 2019 14:30:06,302 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:30:06,550 INFO : Status: Waiting_To_Download
17 Oct 2019 14:30:26,551 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:30:26,797 INFO : Status: Waiting_To_Download
17 Oct 2019 14:30:46,798 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:30:47,044 INFO : Status: Waiting_To_Download
17 Oct 2019 14:31:07,045 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:31:07,369 INFO : Status: Waiting_To_Download
17 Oct 2019 14:31:27,369 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:31:27,620 INFO : Status: Waiting_To_Download
17 Oct 2019 14:31:47,620 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:31:47,864 INFO : Status: Waiting_To_Download
17 Oct 2019 14:32:07,865 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:32:08,114 INFO : Status: Waiting_To_Download
17 Oct 2019 14:32:28,114 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:32:28,438 INFO : Status: Waiting_To_Download
17 Oct 2019 14:32:48,438 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:32:48,685 INFO : Status: Waiting_To_Download
17 Oct 2019 14:33:08,685 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:33:08,931 INFO : Status: Waiting_To_Download
17 Oct 2019 14:33:28,931 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:33:29,180 INFO : Status: Waiting_To_Download
17 Oct 2019 14:33:49,180 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:33:49,503 INFO : Status: Waiting_To_Download
17 Oct 2019 14:34:09,504 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:34:09,751 INFO : Status: Waiting_To_Download
17 Oct 2019 14:34:29,752 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:34:30,001 INFO : Status: Waiting_To_Download
17 Oct 2019 14:34:50,002 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:34:50,253 INFO : Status: Waiting_To_Download
17 Oct 2019 14:35:10,253 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:35:10,573 INFO : Status: Waiting_To_Download
17 Oct 2019 14:35:30,574 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:35:30,818 INFO : Status: Waiting_To_Download
17 Oct 2019 14:35:50,818 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:35:51,064 INFO : Status: Waiting_To_Download
17 Oct 2019 14:36:11,064 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:36:11,309 INFO : Status: Waiting_To_Download
17 Oct 2019 14:36:31,310 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:36:31,553 INFO : Status: Waiting_To_Download
17 Oct 2019 14:36:51,553 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:36:51,801 INFO : Status: Waiting_To_Download
17 Oct 2019 14:37:11,802 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:37:12,052 INFO : Status: Waiting_To_Download
17 Oct 2019 14:37:32,052 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:37:32,299 INFO : Status: Waiting_To_Download
17 Oct 2019 14:37:52,300 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:37:52,625 INFO : Status: Waiting_To_Download
17 Oct 2019 14:38:12,626 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:38:12,873 INFO : Status: Waiting_To_Download
17 Oct 2019 14:38:32,874 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:38:33,119 INFO : Status: Waiting_To_Download
17 Oct 2019 14:38:53,120 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:38:53,368 INFO : Status: Waiting_To_Download
17 Oct 2019 14:39:13,368 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:39:13,692 INFO : Status: Waiting_To_Download
17 Oct 2019 14:39:33,692 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:39:33,941 INFO : Status: Waiting_To_Download
17 Oct 2019 14:39:53,942 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:39:54,187 INFO : Status: Waiting_To_Download
17 Oct 2019 14:40:14,188 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:40:14,433 INFO : Status: Waiting_To_Download
17 Oct 2019 14:40:34,434 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:40:34,768 INFO : Status: Waiting_To_Download
17 Oct 2019 14:40:54,768 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:40:55,018 INFO : Status: Waiting_To_Download
17 Oct 2019 14:41:15,018 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:41:15,269 INFO : Status: Waiting_To_Download
17 Oct 2019 14:41:35,270 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:41:35,677 INFO : Status: Waiting_To_Download
17 Oct 2019 14:41:55,677 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:41:56,000 INFO : Status: Waiting_To_Download
17 Oct 2019 14:42:16,001 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:42:16,248 INFO : Status: Waiting_To_Download
17 Oct 2019 14:42:36,249 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:42:36,567 INFO : Status: Waiting_To_Download
17 Oct 2019 14:42:56,567 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:42:56,813 INFO : Status: Waiting_To_Download
17 Oct 2019 14:43:16,814 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:43:17,063 INFO : Status: Waiting_To_Download
17 Oct 2019 14:43:37,064 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:43:37,313 INFO : Status: Waiting_To_Download
17 Oct 2019 14:43:57,313 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:43:57,563 INFO : Status: Waiting_To_Download
17 Oct 2019 14:44:17,564 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:44:17,917 INFO : Status: Waiting_To_Download
17 Oct 2019 14:44:37,918 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:44:38,161 INFO : Status: Waiting_To_Download
17 Oct 2019 14:44:58,162 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:44:58,409 INFO : Status: Waiting_To_Download
17 Oct 2019 14:45:18,410 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:45:18,750 INFO : Status: Waiting_To_Download
17 Oct 2019 14:45:38,750 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:45:38,998 INFO : Status: Waiting_To_Download
17 Oct 2019 14:45:58,998 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:45:59,243 INFO : Status: Waiting_To_Download
17 Oct 2019 14:46:19,243 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:46:19,493 INFO : Status: Waiting_To_Download
17 Oct 2019 14:46:39,494 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:46:39,812 INFO : Status: Waiting_To_Download
17 Oct 2019 14:46:59,813 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:47:00,060 INFO : Status: Waiting_To_Download
17 Oct 2019 14:47:20,060 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:47:20,306 INFO : Status: Waiting_To_Download
17 Oct 2019 14:47:40,307 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:47:40,560 INFO : Status: Waiting_To_Download
17 Oct 2019 14:48:00,561 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:48:00,883 INFO : Status: Waiting_To_Download
17 Oct 2019 14:48:20,884 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:48:21,131 INFO : Status: Waiting_To_Download
17 Oct 2019 14:48:41,131 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:48:41,379 INFO : Status: Waiting_To_Download
17 Oct 2019 14:49:01,379 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:49:01,637 INFO : Status: Waiting_To_Download
17 Oct 2019 14:49:21,638 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:49:21,886 INFO : Status: Waiting_To_Download
17 Oct 2019 14:49:41,886 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:49:42,133 INFO : Status: Waiting_To_Download
17 Oct 2019 14:50:02,134 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:50:02,458 INFO : Status: Waiting_To_Download
17 Oct 2019 14:50:22,459 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:50:22,705 INFO : Status: Waiting_To_Download
17 Oct 2019 14:50:42,706 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:50:42,955 INFO : Status: Waiting_To_Download
17 Oct 2019 14:51:02,955 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:51:03,287 INFO : Status: Waiting_To_Download
17 Oct 2019 14:51:23,288 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:51:23,537 INFO : Status: Waiting_To_Download
17 Oct 2019 14:51:43,538 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:51:43,783 INFO : Status: Waiting_To_Download
17 Oct 2019 14:52:03,784 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:52:04,036 INFO : Status: Waiting_To_Download
17 Oct 2019 14:52:24,036 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:52:24,281 INFO : Status: Waiting_To_Download
17 Oct 2019 14:52:44,282 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:52:44,613 INFO : Status: Waiting_To_Download
17 Oct 2019 14:53:04,614 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:53:04,859 INFO : Status: Waiting_To_Download
17 Oct 2019 14:53:24,860 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:53:25,108 INFO : Status: Waiting_To_Download
17 Oct 2019 14:53:45,109 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:53:45,361 INFO : Status: Waiting_To_Download
17 Oct 2019 14:54:05,361 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:54:05,688 INFO : Status: Waiting_To_Download
17 Oct 2019 14:54:25,689 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:54:25,934 INFO : Status: Waiting_To_Download
17 Oct 2019 14:54:45,935 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:54:46,181 INFO : Status: Waiting_To_Download
17 Oct 2019 14:55:06,182 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:55:06,447 INFO : Status: Waiting_To_Download
17 Oct 2019 14:55:26,447 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:55:26,772 INFO : Status: Waiting_To_Download
17 Oct 2019 14:55:46,772 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:55:47,020 INFO : Status: Waiting_To_Download
17 Oct 2019 14:56:07,020 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:56:07,268 INFO : Status: Waiting_To_Download
17 Oct 2019 14:56:27,269 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:56:27,571 INFO : Status: Waiting_To_Download
17 Oct 2019 14:56:47,572 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:56:47,893 INFO : Status: Waiting_To_Download
17 Oct 2019 14:57:07,894 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:57:08,140 INFO : Status: Waiting_To_Download
17 Oct 2019 14:57:28,140 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:57:28,386 INFO : Status: Waiting_To_Download
17 Oct 2019 14:57:48,387 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:57:48,633 INFO : Status: Waiting_To_Download
17 Oct 2019 14:58:08,633 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:58:08,954 INFO : Status: Waiting_To_Download
17 Oct 2019 14:58:28,954 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:58:29,200 INFO : Status: Waiting_To_Download
17 Oct 2019 14:58:49,201 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:58:49,446 INFO : Status: Waiting_To_Download
17 Oct 2019 14:59:09,446 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:59:09,693 INFO : Status: Waiting_To_Download
17 Oct 2019 14:59:29,693 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:59:30,197 INFO : Status: Waiting_To_Download
17 Oct 2019 14:59:50,197 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 14:59:50,666 INFO : Status: Waiting_To_Download
17 Oct 2019 15:00:10,666 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 15:00:10,917 INFO : Status: Waiting_To_Download
17 Oct 2019 15:00:30,918 INFO : Checking status of job 5da8dd4ad7148a0019927caa
17 Oct 2019 15:00:31,167 INFO : Status: Waiting_To_Download
17 Oct 2019 15:00:31,168 ERROR: Exceeded 30 minute wait time.
17 Oct 2019 15:00:31,378 INFO : Finished running LINCS PSP pipeline.
17 Oct 2019 15:00:31,379 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'