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Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_11-43-33

P100

Job Status

Created: 2019-10-17 08:52:14
Modified: 2020-06-01 16:07:27
Email: karen@broadinstitute.org
Status: ERROR
Info:
Description: Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_11-43-33
File Path: /data/labkey/files/LINCS/P100/@files/LincsPSP_LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_11-43-33_2019-10-17_08-52-13.log
Files: LincsPSP_LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_11-43-33_2019-10-17_08-52-13.log
Show Grid Browse Files

Log File


17 Oct 2019 08:52:13,917 INFO : Running LINCS pipeline on PSP for:  LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_11-43-33
17 Oct 2019 08:52:13,918 INFO : =======================================
17 Oct 2019 08:52:15,125 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
17 Oct 2019 08:52:15,125 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_11-43-33
17 Oct 2019 08:52:15,126 INFO : Submitting job for runId: 76841, name: LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_11-43-33
17 Oct 2019 08:52:15,128 INFO : Looking for existing job with name LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_11-43-33
17 Oct 2019 08:52:15,514 INFO : PSP job name: LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_11-43-33
17 Oct 2019 08:52:15,515 INFO : Sending JSON:
17 Oct 2019 08:52:15,515 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_11-43-33_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_11-43-33",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_11-43-33.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=76841&remote=true&reportName=GCT%20File%20P100"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_11-43-33_LVL3.gct"
  }}
}
17 Oct 2019 08:52:15,516 INFO : Sending POST request to https://api.clue.io/api/psp
17 Oct 2019 08:52:15,835 INFO : Response code - 200
17 Oct 2019 08:52:15,835 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_11-43-33","assay":"P100","status":"Waiting_To_Download","id":"5da88e2fd7148a0019927c70","created":"2019-10-17T15:52:15.580Z","last_modified":"2019-10-17T15:52:15.580Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=76841&remote=true&reportName=GCT%20File%20P100"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_11-43-33_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_11-43-33_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate89_annotated_minimized_2019-10-17_11-43-33.cfg"}}}
17 Oct 2019 08:52:15,836 INFO : Sent POST request to https://api.clue.io/api/psp
17 Oct 2019 08:52:15,839 INFO : Checking status of job 5da88e2fd7148a0019927c70
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17 Oct 2019 09:23:00,873 ERROR: Exceeded 30 minute wait time.
17 Oct 2019 09:23:01,691 INFO : Finished running LINCS PSP pipeline.
17 Oct 2019 09:23:01,691 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'