Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate70_annotated_minimized_2019-10-11

Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate70_annotated_minimized_2019-10-11_15-25-03

P100

Job Status

Created:

2019-10-11 12:34:00

Modified:

2020-06-01 16:07:27

Email:

karen@broadinstitute.org

Status:

COMPLETE

Info:

Description:

Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate70_annotated_minimized_2019-10-11_15-25-03

File Path:

/data/labkey/files/LINCS/P100/@files/LincsPSP_LINCS_P100_DIA_Plate70_annotated_minimized_2019-10-11_15-25-03_2019-10-11_12-33-59.log

Files:

LincsPSP_LINCS_P100_DIA_Plate70_annotated_minimized_2019-10-11_15-25-03_2019-10-11_12-33-59.log

Join job:

Status	Description

Split jobs:

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Log File

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11 Oct 2019 12:33:59,981 INFO : Running LINCS pipeline on PSP for:  LINCS_P100_DIA_Plate70_annotated_minimized_2019-10-11_15-25-03

11 Oct 2019 12:33:59,982 INFO : =======================================

11 Oct 2019 12:42:09,527 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'

11 Oct 2019 12:42:09,560 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate70_annotated_minimized_2019-10-11_15-25-03

11 Oct 2019 12:42:09,563 INFO : Submitting job for runId: 76517, name: LINCS_P100_DIA_Plate70_annotated_minimized_2019-10-11_15-25-03

11 Oct 2019 12:42:09,566 INFO : Looking for existing job with name LINCS_P100_DIA_Plate70_annotated_minimized_2019-10-11_15-25-03

11 Oct 2019 12:42:10,779 INFO : PSP job name: LINCS_P100_DIA_Plate70_annotated_minimized_2019-10-11_15-25-03

11 Oct 2019 12:42:10,781 INFO : Sending JSON:

11 Oct 2019 12:42:10,781 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate70_annotated_minimized_2019-10-11_15-25-03_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_DIA_Plate70_annotated_minimized_2019-10-11_15-25-03",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate70_annotated_minimized_2019-10-11_15-25-03.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=76517&remote=true&reportName=GCT%20File%20P100"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate70_annotated_minimized_2019-10-11_15-25-03_LVL3.gct"
  }}
}

11 Oct 2019 12:42:10,785 INFO : Sending POST request to https://api.clue.io/api/psp

11 Oct 2019 12:42:11,038 INFO : Response code - 200

11 Oct 2019 12:42:11,039 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate70_annotated_minimized_2019-10-11_15-25-03","assay":"P100","status":"Waiting_To_Download","id":"5da0db12d7148a001992761e","created":"2019-10-11T19:42:10.856Z","last_modified":"2019-10-11T19:42:10.856Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=76517&remote=true&reportName=GCT%20File%20P100"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate70_annotated_minimized_2019-10-11_15-25-03_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate70_annotated_minimized_2019-10-11_15-25-03_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate70_annotated_minimized_2019-10-11_15-25-03.cfg"}}}

11 Oct 2019 12:42:11,055 INFO : Sent POST request to https://api.clue.io/api/psp

11 Oct 2019 12:42:11,058 INFO : Checking status of job 5da0db12d7148a001992761e

11 Oct 2019 12:42:11,166 INFO : Status: Waiting_To_Download

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11 Oct 2019 13:05:29,669 INFO : Checking status of job 5da0db12d7148a001992761e

11 Oct 2019 13:05:29,958 INFO : Status: created LVL2 GCT

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11 Oct 2019 13:08:12,061 INFO : Status: created LVL 3 GCT

11 Oct 2019 13:08:32,061 INFO : Checking status of job 5da0db12d7148a001992761e

11 Oct 2019 13:08:32,390 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama

11 Oct 2019 13:08:32,391 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama

11 Oct 2019 13:08:32,391 INFO : Finished running LINCS PSP pipeline.

11 Oct 2019 13:08:32,392 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'

PanoramaWeb

PanoramaWeb

Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate70_annotated_minimized_2019-10-11_15-25-03

Job Status

Log File