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Re-running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate18_annotated_minimized_2019-09-12_10-55-06

P100

Job Status

Created: 2019-09-12 09:42:51
Modified: 2020-06-01 16:07:27
Email: vsharma@uw.edu
Status: ERROR
Info:
Description: Re-running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate18_annotated_minimized_2019-09-12_10-55-06
File Path: /data/labkey/files/LINCS/P100/@files/LincsPSP_rerun_LINCS_P100_DIA_Plate18_annotated_minimized_2019-09-12_10-55-06_2019-09-12_09-42-50.log
Files: LincsPSP_rerun_LINCS_P100_DIA_Plate18_annotated_minimized_2019-09-12_10-55-06_2019-09-12_09-42-50.log
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Log File


12 Sep 2019 09:42:51,085 INFO : Re-running LINCS pipeline on PSP for:  LINCS_P100_DIA_Plate18_annotated_minimized_2019-09-12_10-55-06
12 Sep 2019 09:42:51,086 INFO : =======================================
12 Sep 2019 09:42:51,443 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
12 Sep 2019 09:42:51,443 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate18_annotated_minimized_2019-09-12_10-55-06
12 Sep 2019 09:42:51,443 INFO : Resubmitting job for runId: 74226, name: LINCS_P100_DIA_Plate18_annotated_minimized_2019-09-12_10-55-06
12 Sep 2019 09:42:51,443 INFO : Old job details: 
12 Sep 2019 09:42:51,443 INFO : Id: 217
12 Sep 2019 09:42:51,443 INFO : Pipeline job Id: 74823
12 Sep 2019 09:42:51,443 INFO : Run Id: 74226
12 Sep 2019 09:42:51,444 INFO : PSP Job Id: 5d7a5efcd6f7f500136ab1de
12 Sep 2019 09:42:51,444 INFO : PSP Job name: LINCS_P100_DIA_Plate18_annotated_minimized_2019-09-12_10-55-06
12 Sep 2019 09:42:51,444 INFO : PSP Job status: Waiting_To_Download
12 Sep 2019 09:42:51,444 INFO : JSON: {"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate18_annotated_minimized_2019-09-12_10-55-06_LVL4.gct"}},"assay":"P100","created":"2019-09-12T15:06:36.671Z","name":"LINCS_P100_DIA_Plate18_annotated_minimized_2019-09-12_10-55-06","id":"5d7a5efcd6f7f500136ab1de","last_modified":"2019-09-12T15:06:36.671Z","config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate18_annotated_minimized_2019-09-12_10-55-06.cfg"}},"level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=74226&remote=true&reportName=GCT%20File%20P100"}},"status":"Waiting_To_Download","level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate18_annotated_minimized_2019-09-12_10-55-06_LVL3.gct"}}}
12 Sep 2019 09:42:51,444 INFO : Resubmitting...
12 Sep 2019 09:42:51,446 INFO : Looking for existing job with name LINCS_P100_DIA_Plate18_annotated_minimized_2019-09-12_10-55-06
12 Sep 2019 09:42:51,767 INFO : Job with name LINCS_P100_DIA_Plate18_annotated_minimized_2019-09-12_10-55-06exists.
12 Sep 2019 09:42:51,767 INFO : Looking for existing job with name LINCS_P100_DIA_Plate18_annotated_minimized_2019-09-12_10-55-06_2
12 Sep 2019 09:42:51,872 INFO : PSP job name: LINCS_P100_DIA_Plate18_annotated_minimized_2019-09-12_10-55-06_2
12 Sep 2019 09:42:51,873 INFO : Sending JSON:
12 Sep 2019 09:42:51,873 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate18_annotated_minimized_2019-09-12_10-55-06_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_DIA_Plate18_annotated_minimized_2019-09-12_10-55-06_2",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate18_annotated_minimized_2019-09-12_10-55-06.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=74226&remote=true&reportName=GCT%20File%20P100"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate18_annotated_minimized_2019-09-12_10-55-06_LVL3.gct"
  }}
}
12 Sep 2019 09:42:51,873 INFO : Sending POST request to https://api.clue.io/api/psp
12 Sep 2019 09:42:52,072 INFO : Response code - 200
12 Sep 2019 09:42:52,072 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate18_annotated_minimized_2019-09-12_10-55-06_2","assay":"P100","status":"Waiting_To_Download","id":"5d7a758bd6f7f500136ab1e7","created":"2019-09-12T16:42:51.935Z","last_modified":"2019-09-12T16:42:51.935Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=74226&remote=true&reportName=GCT%20File%20P100"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate18_annotated_minimized_2019-09-12_10-55-06_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate18_annotated_minimized_2019-09-12_10-55-06_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate18_annotated_minimized_2019-09-12_10-55-06.cfg"}}}
12 Sep 2019 09:42:52,072 INFO : Sent POST request to https://api.clue.io/api/psp
12 Sep 2019 09:42:52,074 INFO : Checking status of job 5d7a758bd6f7f500136ab1e7
12 Sep 2019 09:42:52,184 INFO : Status: Waiting_To_Download
12 Sep 2019 09:43:12,184 INFO : Checking status of job 5d7a758bd6f7f500136ab1e7
12 Sep 2019 09:43:12,435 INFO : Status: created LVL2 GCT
12 Sep 2019 09:43:32,436 INFO : Checking status of job 5d7a758bd6f7f500136ab1e7
12 Sep 2019 09:43:32,762 INFO : Status: created LVL2 GCT
12 Sep 2019 09:43:52,762 INFO : Checking status of job 5d7a758bd6f7f500136ab1e7
12 Sep 2019 09:43:53,014 INFO : Status: created LVL2 GCT
12 Sep 2019 09:44:13,015 INFO : Checking status of job 5d7a758bd6f7f500136ab1e7
12 Sep 2019 09:44:13,267 INFO : Status: created LVL2 GCT
12 Sep 2019 09:44:33,268 INFO : Checking status of job 5d7a758bd6f7f500136ab1e7
12 Sep 2019 09:44:33,517 INFO : Status: created LVL2 GCT
12 Sep 2019 09:44:53,518 INFO : Checking status of job 5d7a758bd6f7f500136ab1e7
12 Sep 2019 09:44:53,843 INFO : Status: created LVL2 GCT
12 Sep 2019 09:45:13,844 INFO : Checking status of job 5d7a758bd6f7f500136ab1e7
12 Sep 2019 09:45:14,096 INFO : Status: created LVL2 GCT
12 Sep 2019 09:45:34,097 INFO : Checking status of job 5d7a758bd6f7f500136ab1e7
12 Sep 2019 09:45:34,349 INFO : Status: created LVL2 GCT
12 Sep 2019 09:45:54,350 INFO : Checking status of job 5d7a758bd6f7f500136ab1e7
12 Sep 2019 09:45:54,602 INFO : Status: created LVL2 GCT
12 Sep 2019 09:45:54,602 ERROR: Error in PSP job. Error: level 3: dry error: 'the label [pr_probe_suitability_manual] is not in the [columns]'
12 Sep 2019 09:45:54,683 INFO : Finished running LINCS PSP pipeline.
12 Sep 2019 09:45:54,683 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'