• Sign In
  1. Pipeline Jobs

Running LINCS pipeline on PSP for: LINCS_P100_QC_Plate18_annotated_minimized_2019-09-12_11-34-00

P100

Job Status

Created: 2019-09-12 08:37:49
Modified: 2020-06-01 16:07:27
Email: karen@broadinstitute.org
Status: COMPLETE
Info:
Description: Running LINCS pipeline on PSP for: LINCS_P100_QC_Plate18_annotated_minimized_2019-09-12_11-34-00
File Path: /data/labkey/files/LINCS/P100/@files/LincsPSP_LINCS_P100_QC_Plate18_annotated_minimized_2019-09-12_11-34-00_2019-09-12_08-37-49.log
Files: LincsPSP_LINCS_P100_QC_Plate18_annotated_minimized_2019-09-12_11-34-00_2019-09-12_08-37-49.log
Show Grid Browse Files

Log File


12 Sep 2019 08:37:49,128 INFO : Running LINCS pipeline on PSP for:  LINCS_P100_QC_Plate18_annotated_minimized_2019-09-12_11-34-00
12 Sep 2019 08:37:49,128 INFO : =======================================
12 Sep 2019 08:37:49,593 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
12 Sep 2019 08:37:49,593 INFO : Running LINCS PSP pipeline for LINCS_P100_QC_Plate18_annotated_minimized_2019-09-12_11-34-00
12 Sep 2019 08:37:49,593 INFO : Submitting job for runId: 74227, name: LINCS_P100_QC_Plate18_annotated_minimized_2019-09-12_11-34-00
12 Sep 2019 08:37:49,595 INFO : Looking for existing job with name LINCS_P100_QC_Plate18_annotated_minimized_2019-09-12_11-34-00
12 Sep 2019 08:37:49,917 INFO : PSP job name: LINCS_P100_QC_Plate18_annotated_minimized_2019-09-12_11-34-00
12 Sep 2019 08:37:49,917 INFO : Sending JSON:
12 Sep 2019 08:37:49,917 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_QC_Plate18_annotated_minimized_2019-09-12_11-34-00_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_QC_Plate18_annotated_minimized_2019-09-12_11-34-00",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_QC_Plate18_annotated_minimized_2019-09-12_11-34-00.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=74227&remote=true&reportName=GCT%20File%20P100"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_QC_Plate18_annotated_minimized_2019-09-12_11-34-00_LVL3.gct"
  }}
}
12 Sep 2019 08:37:49,918 INFO : Sending POST request to https://api.clue.io/api/psp
12 Sep 2019 08:37:50,093 INFO : Response code - 200
12 Sep 2019 08:37:50,094 INFO : Response from server: {"name":"LINCS_P100_QC_Plate18_annotated_minimized_2019-09-12_11-34-00","assay":"P100","status":"Waiting_To_Download","id":"5d7a664dd6f7f500136ab1e2","created":"2019-09-12T15:37:49.981Z","last_modified":"2019-09-12T15:37:49.981Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=74227&remote=true&reportName=GCT%20File%20P100"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_QC_Plate18_annotated_minimized_2019-09-12_11-34-00_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_QC_Plate18_annotated_minimized_2019-09-12_11-34-00_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_QC_Plate18_annotated_minimized_2019-09-12_11-34-00.cfg"}}}
12 Sep 2019 08:37:50,094 INFO : Sent POST request to https://api.clue.io/api/psp
12 Sep 2019 08:37:50,095 INFO : Checking status of job 5d7a664dd6f7f500136ab1e2
12 Sep 2019 08:37:50,202 INFO : Status: Waiting_To_Download
12 Sep 2019 08:38:10,203 INFO : Checking status of job 5d7a664dd6f7f500136ab1e2
12 Sep 2019 08:38:10,455 INFO : Status: Waiting_To_Download
12 Sep 2019 08:38:30,455 INFO : Checking status of job 5d7a664dd6f7f500136ab1e2
12 Sep 2019 08:38:30,706 INFO : Status: Waiting_To_Download
12 Sep 2019 08:38:50,707 INFO : Checking status of job 5d7a664dd6f7f500136ab1e2
12 Sep 2019 08:38:50,957 INFO : Status: created LVL2 GCT
12 Sep 2019 08:39:10,957 INFO : Checking status of job 5d7a664dd6f7f500136ab1e2
12 Sep 2019 08:39:11,280 INFO : Status: created LVL2 GCT
12 Sep 2019 08:39:31,280 INFO : Checking status of job 5d7a664dd6f7f500136ab1e2
12 Sep 2019 08:39:31,529 INFO : Status: created LVL2 GCT
12 Sep 2019 08:39:51,529 INFO : Checking status of job 5d7a664dd6f7f500136ab1e2
12 Sep 2019 08:39:51,778 INFO : Status: created LVL2 GCT
12 Sep 2019 08:40:11,779 INFO : Checking status of job 5d7a664dd6f7f500136ab1e2
12 Sep 2019 08:40:12,026 INFO : Status: created LVL2 GCT
12 Sep 2019 08:40:32,027 INFO : Checking status of job 5d7a664dd6f7f500136ab1e2
12 Sep 2019 08:40:32,356 INFO : Status: created LVL2 GCT
12 Sep 2019 08:40:52,357 INFO : Checking status of job 5d7a664dd6f7f500136ab1e2
12 Sep 2019 08:40:52,607 INFO : Status: created LVL2 GCT
12 Sep 2019 08:41:12,608 INFO : Checking status of job 5d7a664dd6f7f500136ab1e2
12 Sep 2019 08:41:12,860 INFO : Status: created LVL2 GCT
12 Sep 2019 08:41:32,860 INFO : Checking status of job 5d7a664dd6f7f500136ab1e2
12 Sep 2019 08:41:33,110 INFO : Status: created LVL2 GCT
12 Sep 2019 08:41:53,110 INFO : Checking status of job 5d7a664dd6f7f500136ab1e2
12 Sep 2019 08:41:53,435 INFO : Status: created LVL 4 GCT
12 Sep 2019 08:42:13,436 INFO : Checking status of job 5d7a664dd6f7f500136ab1e2
12 Sep 2019 08:42:14,726 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
12 Sep 2019 08:42:14,726 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
12 Sep 2019 08:42:14,726 INFO : Finished running LINCS PSP pipeline.
12 Sep 2019 08:42:14,727 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'