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Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate18_annotated_minimized_2019-09-12_10-55-06

P100

Job Status

Created: 2019-09-12 08:06:35
Modified: 2020-06-01 16:07:27
Email: karen@broadinstitute.org
Status: ERROR
Info:
Description: Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate18_annotated_minimized_2019-09-12_10-55-06
File Path: /data/labkey/files/LINCS/P100/@files/LincsPSP_LINCS_P100_DIA_Plate18_annotated_minimized_2019-09-12_10-55-06_2019-09-12_08-06-34.log
Files: LincsPSP_LINCS_P100_DIA_Plate18_annotated_minimized_2019-09-12_10-55-06_2019-09-12_08-06-34.log
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Log File


12 Sep 2019 08:06:35,078 INFO : Running LINCS pipeline on PSP for:  LINCS_P100_DIA_Plate18_annotated_minimized_2019-09-12_10-55-06
12 Sep 2019 08:06:35,078 INFO : =======================================
12 Sep 2019 08:06:36,174 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
12 Sep 2019 08:06:36,175 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate18_annotated_minimized_2019-09-12_10-55-06
12 Sep 2019 08:06:36,175 INFO : Submitting job for runId: 74226, name: LINCS_P100_DIA_Plate18_annotated_minimized_2019-09-12_10-55-06
12 Sep 2019 08:06:36,178 INFO : Looking for existing job with name LINCS_P100_DIA_Plate18_annotated_minimized_2019-09-12_10-55-06
12 Sep 2019 08:06:36,604 INFO : PSP job name: LINCS_P100_DIA_Plate18_annotated_minimized_2019-09-12_10-55-06
12 Sep 2019 08:06:36,605 INFO : Sending JSON:
12 Sep 2019 08:06:36,606 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate18_annotated_minimized_2019-09-12_10-55-06_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_DIA_Plate18_annotated_minimized_2019-09-12_10-55-06",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate18_annotated_minimized_2019-09-12_10-55-06.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=74226&remote=true&reportName=GCT%20File%20P100"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate18_annotated_minimized_2019-09-12_10-55-06_LVL3.gct"
  }}
}
12 Sep 2019 08:06:36,606 INFO : Sending POST request to https://api.clue.io/api/psp
12 Sep 2019 08:06:36,816 INFO : Response code - 200
12 Sep 2019 08:06:36,816 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate18_annotated_minimized_2019-09-12_10-55-06","assay":"P100","status":"Waiting_To_Download","id":"5d7a5efcd6f7f500136ab1de","created":"2019-09-12T15:06:36.671Z","last_modified":"2019-09-12T15:06:36.671Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=74226&remote=true&reportName=GCT%20File%20P100"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate18_annotated_minimized_2019-09-12_10-55-06_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate18_annotated_minimized_2019-09-12_10-55-06_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate18_annotated_minimized_2019-09-12_10-55-06.cfg"}}}
12 Sep 2019 08:06:36,817 INFO : Sent POST request to https://api.clue.io/api/psp
12 Sep 2019 08:06:36,820 INFO : Checking status of job 5d7a5efcd6f7f500136ab1de
12 Sep 2019 08:06:36,927 INFO : Status: Waiting_To_Download
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12 Sep 2019 08:37:21,972 ERROR: Exceeded 30 minute wait time.
12 Sep 2019 08:37:22,312 INFO : Finished running LINCS PSP pipeline.
12 Sep 2019 08:37:22,313 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'