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Re-running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate34_annotated_minimized_2019-08-30_17-25-21

P100

Job Status

Created: 2019-08-30 21:17:44
Modified: 2020-06-01 16:07:27
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Re-running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate34_annotated_minimized_2019-08-30_17-25-21
File Path: /data/labkey/files/LINCS/P100/@files/LincsPSP_rerun_LINCS_P100_DIA_Plate34_annotated_minimized_2019-08-30_17-25-21_2019-08-30_21-17-44.log
Files: LincsPSP_rerun_LINCS_P100_DIA_Plate34_annotated_minimized_2019-08-30_17-25-21_2019-08-30_21-17-44.log
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Log File


30 Aug 2019 21:17:44,619 INFO : Re-running LINCS pipeline on PSP for:  LINCS_P100_DIA_Plate34_annotated_minimized_2019-08-30_17-25-21
30 Aug 2019 21:17:44,620 INFO : =======================================
30 Aug 2019 21:17:45,196 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
30 Aug 2019 21:17:45,197 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate34_annotated_minimized_2019-08-30_17-25-21
30 Aug 2019 21:17:45,197 INFO : Resubmitting job for runId: 73638, name: LINCS_P100_DIA_Plate34_annotated_minimized_2019-08-30_17-25-21
30 Aug 2019 21:17:45,198 INFO : Old job details: 
30 Aug 2019 21:17:45,198 INFO : Id: 213
30 Aug 2019 21:17:45,199 INFO : Pipeline job Id: 74230
30 Aug 2019 21:17:45,199 INFO : Run Id: 73638
30 Aug 2019 21:17:45,199 INFO : PSP Job Id: 5d6995558c27896ce64a51eb
30 Aug 2019 21:17:45,200 INFO : PSP Job name: LINCS_P100_DIA_Plate34_annotated_minimized_2019-08-30_17-25-21
30 Aug 2019 21:17:45,200 INFO : PSP Job status: Waiting_To_Download
30 Aug 2019 21:17:45,200 INFO : JSON: {"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate34_annotated_minimized_2019-08-30_17-25-21_LVL4.gct"}},"assay":"P100","created":"2019-08-30T21:29:57.431Z","name":"LINCS_P100_DIA_Plate34_annotated_minimized_2019-08-30_17-25-21","id":"5d6995558c27896ce64a51eb","last_modified":"2019-08-30T21:29:57.431Z","config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate34_annotated_minimized_2019-08-30_17-25-21.cfg"}},"level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=73638&remote=true&reportName=GCT%20File%20P100"}},"status":"Waiting_To_Download","level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate34_annotated_minimized_2019-08-30_17-25-21_LVL3.gct"}}}
30 Aug 2019 21:17:45,201 INFO : Resubmitting...
30 Aug 2019 21:17:45,204 INFO : Looking for existing job with name LINCS_P100_DIA_Plate34_annotated_minimized_2019-08-30_17-25-21
30 Aug 2019 21:17:45,574 INFO : Job with name LINCS_P100_DIA_Plate34_annotated_minimized_2019-08-30_17-25-21exists.
30 Aug 2019 21:17:45,574 INFO : Looking for existing job with name LINCS_P100_DIA_Plate34_annotated_minimized_2019-08-30_17-25-21_2
30 Aug 2019 21:17:45,676 INFO : PSP job name: LINCS_P100_DIA_Plate34_annotated_minimized_2019-08-30_17-25-21_2
30 Aug 2019 21:17:45,677 INFO : Sending JSON:
30 Aug 2019 21:17:45,677 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate34_annotated_minimized_2019-08-30_17-25-21_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_DIA_Plate34_annotated_minimized_2019-08-30_17-25-21_2",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate34_annotated_minimized_2019-08-30_17-25-21.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=73638&remote=true&reportName=GCT%20File%20P100"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate34_annotated_minimized_2019-08-30_17-25-21_LVL3.gct"
  }}
}
30 Aug 2019 21:17:45,678 INFO : Sending POST request to https://api.clue.io/api/psp
30 Aug 2019 21:17:45,899 INFO : Response code - 200
30 Aug 2019 21:17:45,900 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate34_annotated_minimized_2019-08-30_17-25-21_2","assay":"P100","status":"Waiting_To_Download","id":"5d69f4e98c27896ce64a5200","created":"2019-08-31T04:17:45.738Z","last_modified":"2019-08-31T04:17:45.738Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=73638&remote=true&reportName=GCT%20File%20P100"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate34_annotated_minimized_2019-08-30_17-25-21_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate34_annotated_minimized_2019-08-30_17-25-21_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate34_annotated_minimized_2019-08-30_17-25-21.cfg"}}}
30 Aug 2019 21:17:45,901 INFO : Sent POST request to https://api.clue.io/api/psp
30 Aug 2019 21:17:45,904 INFO : Checking status of job 5d69f4e98c27896ce64a5200
30 Aug 2019 21:17:46,009 INFO : Status: Waiting_To_Download
30 Aug 2019 21:18:06,010 INFO : Checking status of job 5d69f4e98c27896ce64a5200
30 Aug 2019 21:18:06,246 INFO : Status: created LVL2 GCT
30 Aug 2019 21:18:26,247 INFO : Checking status of job 5d69f4e98c27896ce64a5200
30 Aug 2019 21:18:26,481 INFO : Status: created LVL2 GCT
30 Aug 2019 21:18:46,482 INFO : Checking status of job 5d69f4e98c27896ce64a5200
30 Aug 2019 21:18:46,717 INFO : Status: created LVL2 GCT
30 Aug 2019 21:19:06,718 INFO : Checking status of job 5d69f4e98c27896ce64a5200
30 Aug 2019 21:19:06,959 INFO : Status: created LVL2 GCT
30 Aug 2019 21:19:26,960 INFO : Checking status of job 5d69f4e98c27896ce64a5200
30 Aug 2019 21:19:27,200 INFO : Status: created LVL2 GCT
30 Aug 2019 21:19:47,201 INFO : Checking status of job 5d69f4e98c27896ce64a5200
30 Aug 2019 21:19:47,473 INFO : Status: created LVL2 GCT
30 Aug 2019 21:20:07,474 INFO : Checking status of job 5d69f4e98c27896ce64a5200
30 Aug 2019 21:20:07,717 INFO : Status: created LVL2 GCT
30 Aug 2019 21:20:27,718 INFO : Checking status of job 5d69f4e98c27896ce64a5200
30 Aug 2019 21:20:27,951 INFO : Status: created LVL2 GCT
30 Aug 2019 21:20:47,952 INFO : Checking status of job 5d69f4e98c27896ce64a5200
30 Aug 2019 21:20:48,225 INFO : Status: created LVL 4 GCT
30 Aug 2019 21:21:08,226 INFO : Checking status of job 5d69f4e98c27896ce64a5200
30 Aug 2019 21:21:08,517 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
30 Aug 2019 21:21:08,517 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
30 Aug 2019 21:21:08,517 INFO : Finished running LINCS PSP pipeline.
30 Aug 2019 21:21:08,518 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'