Re-running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate87_annotated_minimized_2019-08-28_17-17-02

P100

Job Status

Created: 2019-08-29 07:02:56
Modified: 2020-06-01 16:07:27
Email: vsharma@uw.edu
Status: ERROR
Info:
Description: Re-running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate87_annotated_minimized_2019-08-28_17-17-02
File Path: /data/labkey/files/LINCS/P100/@files/LincsPSP_rerun_LINCS_P100_DIA_Plate87_annotated_minimized_2019-08-28_17-17-02_2019-08-29_07-02-56.log
Files: LincsPSP_rerun_LINCS_P100_DIA_Plate87_annotated_minimized_2019-08-28_17-17-02_2019-08-29_07-02-56.log

Log File


29 Aug 2019 07:02:56,665 INFO : Re-running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate87_annotated_minimized_2019-08-28_17-17-02
29 Aug 2019 07:02:56,666 INFO : =======================================
29 Aug 2019 07:02:57,215 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
29 Aug 2019 07:02:57,215 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate87_annotated_minimized_2019-08-28_17-17-02
29 Aug 2019 07:02:57,218 INFO : Resubmitting job for runId: 73535, name: LINCS_P100_DIA_Plate87_annotated_minimized_2019-08-28_17-17-02
29 Aug 2019 07:02:57,219 INFO : Old job details:
29 Aug 2019 07:02:57,230 INFO : Id: 209
29 Aug 2019 07:02:57,231 INFO : Pipeline job Id: 74118
29 Aug 2019 07:02:57,231 INFO : Run Id: 73535
29 Aug 2019 07:02:57,232 INFO : PSP Job Id: 5d66f1da92c18f7b0149fc1a
29 Aug 2019 07:02:57,232 INFO : PSP Job name: LINCS_P100_DIA_Plate87_annotated_minimized_2019-08-28_17-17-02
29 Aug 2019 07:02:57,233 INFO : PSP Job status: Waiting_To_Download
29 Aug 2019 07:02:57,233 INFO : JSON: {"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate87_annotated_minimized_2019-08-28_17-17-02_LVL4.gct"}},"assay":"P100","created":"2019-08-28T21:27:54.432Z","name":"LINCS_P100_DIA_Plate87_annotated_minimized_2019-08-28_17-17-02","id":"5d66f1da92c18f7b0149fc1a","last_modified":"2019-08-28T21:27:54.433Z","config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate87_annotated_minimized_2019-08-28_17-17-02.cfg"}},"level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=73535&remote=true&reportName=GCT%20File%20P100"}},"status":"Waiting_To_Download","level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate87_annotated_minimized_2019-08-28_17-17-02_LVL3.gct"}}}
29 Aug 2019 07:02:57,234 INFO : Resubmitting...
29 Aug 2019 07:02:57,237 INFO : Looking for existing job with name LINCS_P100_DIA_Plate87_annotated_minimized_2019-08-28_17-17-02
29 Aug 2019 07:02:57,697 INFO : Job with name LINCS_P100_DIA_Plate87_annotated_minimized_2019-08-28_17-17-02exists.
29 Aug 2019 07:02:57,701 INFO : Looking for existing job with name LINCS_P100_DIA_Plate87_annotated_minimized_2019-08-28_17-17-02_2
29 Aug 2019 07:02:57,809 INFO : PSP job name: LINCS_P100_DIA_Plate87_annotated_minimized_2019-08-28_17-17-02_2
29 Aug 2019 07:02:57,810 INFO : Sending JSON:
29 Aug 2019 07:02:57,810 INFO : { "level 4": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate87_annotated_minimized_2019-08-28_17-17-02_LVL4.gct" }}, "assay": "P100", "name": "LINCS_P100_DIA_Plate87_annotated_minimized_2019-08-28_17-17-02_2", "config": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate87_annotated_minimized_2019-08-28_17-17-02.cfg" }}, "level 2": {"panorama": { "method": "GET", "url": "https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=73535&remote=true&reportName=GCT%20File%20P100" }}, "level 3": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate87_annotated_minimized_2019-08-28_17-17-02_LVL3.gct" }} }
29 Aug 2019 07:02:57,811 INFO : Sending POST request to https://api.clue.io/api/psp
29 Aug 2019 07:02:58,019 INFO : Response code - 200
29 Aug 2019 07:02:58,019 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate87_annotated_minimized_2019-08-28_17-17-02_2","assay":"P100","status":"Waiting_To_Download","id":"5d67db111f6dbcd25c353817","created":"2019-08-29T14:02:57.874Z","last_modified":"2019-08-29T14:02:57.874Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=73535&remote=true&reportName=GCT%20File%20P100"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate87_annotated_minimized_2019-08-28_17-17-02_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate87_annotated_minimized_2019-08-28_17-17-02_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate87_annotated_minimized_2019-08-28_17-17-02.cfg"}}}
29 Aug 2019 07:02:58,020 INFO : Sent POST request to https://api.clue.io/api/psp
29 Aug 2019 07:02:58,023 INFO : Checking status of job 5d67db111f6dbcd25c353817
29 Aug 2019 07:02:58,131 INFO : Status: Waiting_To_Download
29 Aug 2019 07:03:18,131 INFO : Checking status of job 5d67db111f6dbcd25c353817
29 Aug 2019 07:03:18,452 INFO : Status: created LVL2 GCT
29 Aug 2019 07:03:38,453 INFO : Checking status of job 5d67db111f6dbcd25c353817
29 Aug 2019 07:03:38,756 INFO : Status: created LVL2 GCT
29 Aug 2019 07:03:58,756 INFO : Checking status of job 5d67db111f6dbcd25c353817
29 Aug 2019 07:03:59,011 INFO : Status: created LVL2 GCT
29 Aug 2019 07:04:19,012 INFO : Checking status of job 5d67db111f6dbcd25c353817
29 Aug 2019 07:04:19,266 INFO : Status: created LVL2 GCT
29 Aug 2019 07:04:39,267 INFO : Checking status of job 5d67db111f6dbcd25c353817
29 Aug 2019 07:04:39,588 INFO : Status: created LVL2 GCT
29 Aug 2019 07:04:59,589 INFO : Checking status of job 5d67db111f6dbcd25c353817
29 Aug 2019 07:04:59,847 INFO : Status: created LVL2 GCT
29 Aug 2019 07:05:19,848 INFO : Checking status of job 5d67db111f6dbcd25c353817
29 Aug 2019 07:05:20,136 INFO : Status: created LVL2 GCT
29 Aug 2019 07:05:40,137 INFO : Checking status of job 5d67db111f6dbcd25c353817
29 Aug 2019 07:05:40,453 INFO : Status: created LVL2 GCT
29 Aug 2019 07:06:00,454 INFO : Checking status of job 5d67db111f6dbcd25c353817
29 Aug 2019 07:06:00,716 INFO : Status: created LVL 3 GCT
29 Aug 2019 07:06:20,717 INFO : Checking status of job 5d67db111f6dbcd25c353817
29 Aug 2019 07:06:20,986 INFO : Status: created LVL 3 GCT
29 Aug 2019 07:06:20,986 ERROR: Error in PSP job. Error: level 4: tear error: Col_meta_df does not have the col_subset_field: det_normalization_group_vector.
29 Aug 2019 07:06:21,655 INFO : Finished running LINCS PSP pipeline.
29 Aug 2019 07:06:21,655 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'