Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate70_annotated_minimized_2019-06-03_13-47-33

P100

Job Status

Created: 2019-06-09 10:53:26
Modified: 2020-06-01 16:07:27
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate70_annotated_minimized_2019-06-03_13-47-33
File Path: /data/labkey/files/LINCS/P100/@files/LincsPSP_LINCS_P100_DIA_Plate70_annotated_minimized_2019-06-03_13-47-33_2019-06-09_10-53-26.log
Files: LincsPSP_LINCS_P100_DIA_Plate70_annotated_minimized_2019-06-03_13-47-33_2019-06-09_10-53-26.log

Log File


09 Jun 2019 10:53:25,996 INFO : Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate70_annotated_minimized_2019-06-03_13-47-33
09 Jun 2019 10:53:25,997 INFO : =======================================
09 Jun 2019 11:09:05,323 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
09 Jun 2019 11:09:05,324 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate70_annotated_minimized_2019-06-03_13-47-33
09 Jun 2019 11:09:05,324 INFO : Submitting job for runId: 67512, name: LINCS_P100_DIA_Plate70_annotated_minimized_2019-06-03_13-47-33
09 Jun 2019 11:09:05,327 INFO : Looking for existing job with name LINCS_P100_DIA_Plate70_annotated_minimized_2019-06-03_13-47-33
09 Jun 2019 11:09:05,432 INFO : PSP job name: LINCS_P100_DIA_Plate70_annotated_minimized_2019-06-03_13-47-33
09 Jun 2019 11:09:05,433 INFO : Sending JSON:
09 Jun 2019 11:09:05,434 INFO : { "level 4": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate70_annotated_minimized_2019-06-03_13-47-33_LVL4.gct" }}, "assay": "P100", "name": "LINCS_P100_DIA_Plate70_annotated_minimized_2019-06-03_13-47-33", "config": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate70_annotated_minimized_2019-06-03_13-47-33.cfg" }}, "level 2": {"panorama": { "method": "GET", "url": "https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=67512&remote=true&reportName=GCT%20File%20P100" }}, "level 3": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate70_annotated_minimized_2019-06-03_13-47-33_LVL3.gct" }} }
09 Jun 2019 11:09:05,434 INFO : Sending POST request to https://api.clue.io/api/psp
09 Jun 2019 11:09:05,638 INFO : Response code - 200
09 Jun 2019 11:09:05,638 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate70_annotated_minimized_2019-06-03_13-47-33","assay":"P100","status":"Waiting_To_Download","id":"5cfd4b41344c151e38c98d6f","created":"2019-06-09T18:09:05.493Z","last_modified":"2019-06-09T18:09:05.493Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=67512&remote=true&reportName=GCT%20File%20P100"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate70_annotated_minimized_2019-06-03_13-47-33_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate70_annotated_minimized_2019-06-03_13-47-33_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate70_annotated_minimized_2019-06-03_13-47-33.cfg"}}}
09 Jun 2019 11:09:05,639 INFO : Sent POST request to https://api.clue.io/api/psp
09 Jun 2019 11:09:05,641 INFO : Checking status of job 5cfd4b41344c151e38c98d6f
09 Jun 2019 11:09:05,746 INFO : Status: Waiting_To_Download
09 Jun 2019 11:09:25,747 INFO : Checking status of job 5cfd4b41344c151e38c98d6f
09 Jun 2019 11:09:25,996 INFO : Status: created LVL 3 GCT
09 Jun 2019 11:09:45,997 INFO : Checking status of job 5cfd4b41344c151e38c98d6f
09 Jun 2019 11:09:46,246 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
09 Jun 2019 11:09:46,246 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
09 Jun 2019 11:09:46,247 INFO : Finished running LINCS PSP pipeline.
09 Jun 2019 11:09:46,247 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'