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Re-running LINCS pipeline for: LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38

P100

Job Status

Created: 2021-04-19 21:21:20
Modified: 2021-04-19 22:12:35
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Re-running LINCS pipeline for: LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38
File Path: /data/labkey/files/LINCS/P100/@files/LincsPSP_rerun_LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38_2021-04-19_21-21-19.log
Files: LincsPSP_rerun_LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38_2021-04-19_21-21-19.log
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Log File


19 Apr 2021 21:21:20,082 INFO : Re-running LINCS pipeline for:  LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38
19 Apr 2021 21:21:20,094 INFO : =======================================
19 Apr 2021 21:39:51,913 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
19 Apr 2021 21:39:51,915 INFO : Starting task to create L2 GCT for LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38.sky.zip
19 Apr 2021 21:39:51,920 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
19 Apr 2021 21:39:51,942 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/eba6d9f4-b20b-4918-8d7e-01dbbd282605/status
19 Apr 2021 21:40:11,956 INFO : Cromwell job status: Running
19 Apr 2021 21:41:32,029 INFO : Cromwell job status: Succeeded
19 Apr 2021 21:41:32,029 INFO : Cromwell job completed successfully
19 Apr 2021 21:41:32,030 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
19 Apr 2021 22:11:45,954 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
19 Apr 2021 22:11:45,956 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38
19 Apr 2021 22:11:45,956 INFO : Resubmitting job for runId: 14050, name: LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38
19 Apr 2021 22:11:45,956 INFO : Old job details: 
19 Apr 2021 22:11:45,956 INFO : Id: 34
19 Apr 2021 22:11:45,956 INFO : Pipeline job Id: 68159
19 Apr 2021 22:11:45,956 INFO : Run Id: 14050
19 Apr 2021 22:11:45,957 INFO : PSP Job Id: 5cfd473a344c151e38c98d5a
19 Apr 2021 22:11:45,957 INFO : PSP Job name: LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38
19 Apr 2021 22:11:45,957 INFO : PSP Job status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 22:11:45,957 INFO : JSON: {"level 4":{"s3":{"url":"s3://proteomics.clue.io/psp/level4/LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38_LVL4.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38_LVL4.gct"}},"assay":"P100","created":"2019-06-09T17:51:54.642Z","name":"LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38","id":"5cfd473a344c151e38c98d5a","last_modified":"2019-06-09T17:52:28.188Z","config":{"s3":{"url":"s3://proteomics.clue.io/psp/config/LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38.cfg"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38.cfg"}},"level 2":{"s3":{"url":"s3://proteomics.clue.io/psp/level2/LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38_LVL2.gct"},"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=14050&remote=true&reportName=GCT%20File%20P100"}},"status":"POUR : succeeded in uploading all GCTs to Panorama","level 3":{"s3":{"url":"s3://proteomics.clue.io/psp/level3/LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38_LVL3.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38_LVL3.gct"}}}
19 Apr 2021 22:11:45,957 INFO : Resubmitting...
19 Apr 2021 22:11:45,959 INFO : Looking for existing job with name LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38
19 Apr 2021 22:11:46,096 INFO : Job with name LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38exists.
19 Apr 2021 22:11:46,097 INFO : Looking for existing job with name LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38_2
19 Apr 2021 22:11:46,230 INFO : PSP job name: LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38_2
19 Apr 2021 22:11:46,231 INFO : Sending JSON:
19 Apr 2021 22:11:46,231 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38_2",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38_LVL3.gct"
  }}
}
19 Apr 2021 22:11:46,233 INFO : Sending POST request to https://api.clue.io/api/psp
19 Apr 2021 22:11:46,429 INFO : Response code - 200
19 Apr 2021 22:11:46,429 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38_2","assay":"P100","status":"Waiting_To_Download","id":"607e6292e1c96f0017d8b89a","created":"2021-04-20T05:11:46.310Z","last_modified":"2021-04-20T05:11:46.310Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate41_annotated_minimized_2017-02-16_14-31-38.cfg"}}}
19 Apr 2021 22:11:46,430 INFO : Sent POST request to https://api.clue.io/api/psp
19 Apr 2021 22:11:46,431 INFO : Checking status of job 607e6292e1c96f0017d8b89a
19 Apr 2021 22:11:46,565 INFO : Status: Waiting_To_Download
19 Apr 2021 22:12:06,566 INFO : Checking status of job 607e6292e1c96f0017d8b89a
19 Apr 2021 22:12:06,846 INFO : Status: created LVL 3 GCT
19 Apr 2021 22:12:26,848 INFO : Checking status of job 607e6292e1c96f0017d8b89a
19 Apr 2021 22:12:35,679 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 22:12:35,679 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 22:12:35,679 INFO : Finished running LINCS PSP pipeline.
19 Apr 2021 22:12:35,679 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'