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Re-running LINCS pipeline for: LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29

P100

Job Status

Created: 2021-04-19 20:23:35
Modified: 2021-04-19 20:56:57
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Re-running LINCS pipeline for: LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29
File Path: /data/labkey/files/LINCS/P100/@files/LincsPSP_rerun_LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29_2021-04-19_20-23-35.log
Files: LincsPSP_rerun_LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29_2021-04-19_20-23-35.log
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Log File


19 Apr 2021 20:23:35,256 INFO : Re-running LINCS pipeline for:  LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29
19 Apr 2021 20:23:35,257 INFO : =======================================
19 Apr 2021 20:37:15,482 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
19 Apr 2021 20:37:15,483 INFO : Starting task to create L2 GCT for LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29.sky.zip
19 Apr 2021 20:37:15,492 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
19 Apr 2021 20:37:15,523 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/9fd71b82-cbf0-4ce8-9363-237275108e52/status
19 Apr 2021 20:37:35,537 INFO : Cromwell job status: Running
19 Apr 2021 20:38:35,599 INFO : Cromwell job status: Succeeded
19 Apr 2021 20:38:35,599 INFO : Cromwell job completed successfully
19 Apr 2021 20:38:35,600 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
19 Apr 2021 20:56:15,802 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
19 Apr 2021 20:56:15,803 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29
19 Apr 2021 20:56:15,804 INFO : Resubmitting job for runId: 31215, name: LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29
19 Apr 2021 20:56:15,804 INFO : Old job details: 
19 Apr 2021 20:56:15,804 INFO : Id: 11
19 Apr 2021 20:56:15,804 INFO : Pipeline job Id: 68135
19 Apr 2021 20:56:15,804 INFO : Run Id: 31215
19 Apr 2021 20:56:15,804 INFO : PSP Job Id: 5cfd437b344c151e38c98d43
19 Apr 2021 20:56:15,804 INFO : PSP Job name: LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29
19 Apr 2021 20:56:15,804 INFO : PSP Job status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 20:56:15,804 INFO : JSON: {"level 4":{"s3":{"url":"s3://proteomics.clue.io/psp/level4/LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29_LVL4.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29_LVL4.gct"}},"assay":"P100","created":"2019-06-09T17:35:55.019Z","name":"LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29","id":"5cfd437b344c151e38c98d43","last_modified":"2019-06-09T17:36:31.204Z","config":{"s3":{"url":"s3://proteomics.clue.io/psp/config/LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29.cfg"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29.cfg"}},"level 2":{"s3":{"url":"s3://proteomics.clue.io/psp/level2/LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29_LVL2.gct"},"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=31215&remote=true&reportName=GCT%20File%20P100"}},"status":"POUR : succeeded in uploading all GCTs to Panorama","level 3":{"s3":{"url":"s3://proteomics.clue.io/psp/level3/LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29_LVL3.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29_LVL3.gct"}}}
19 Apr 2021 20:56:15,804 INFO : Resubmitting...
19 Apr 2021 20:56:15,806 INFO : Looking for existing job with name LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29
19 Apr 2021 20:56:15,946 INFO : Job with name LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29exists.
19 Apr 2021 20:56:15,946 INFO : Looking for existing job with name LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29_2
19 Apr 2021 20:56:16,082 INFO : PSP job name: LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29_2
19 Apr 2021 20:56:16,083 INFO : Sending JSON:
19 Apr 2021 20:56:16,083 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29_2",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29_LVL3.gct"
  }}
}
19 Apr 2021 20:56:16,085 INFO : Sending POST request to https://api.clue.io/api/psp
19 Apr 2021 20:56:16,284 INFO : Response code - 200
19 Apr 2021 20:56:16,284 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29_2","assay":"P100","status":"Waiting_To_Download","id":"607e50e0e1c96f0017d8b87e","created":"2021-04-20T03:56:16.164Z","last_modified":"2021-04-20T03:56:16.164Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29.cfg"}}}
19 Apr 2021 20:56:16,284 INFO : Sent POST request to https://api.clue.io/api/psp
19 Apr 2021 20:56:16,286 INFO : Checking status of job 607e50e0e1c96f0017d8b87e
19 Apr 2021 20:56:16,422 INFO : Status: Waiting_To_Download
19 Apr 2021 20:56:36,428 INFO : Checking status of job 607e50e0e1c96f0017d8b87e
19 Apr 2021 20:56:36,716 INFO : Status: created LVL 3 GCT
19 Apr 2021 20:56:56,717 INFO : Checking status of job 607e50e0e1c96f0017d8b87e
19 Apr 2021 20:56:57,093 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 20:56:57,093 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 20:56:57,093 INFO : Finished running LINCS PSP pipeline.
19 Apr 2021 20:56:57,093 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'