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Re-running LINCS pipeline for: LINCS_P100_DIA_Plate46_annotated_minimized_2018-05-02_17-53-48

P100

Job Status

Created: 2021-04-19 20:23:15
Modified: 2021-04-19 20:55:34
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Re-running LINCS pipeline for: LINCS_P100_DIA_Plate46_annotated_minimized_2018-05-02_17-53-48
File Path: /data/labkey/files/LINCS/P100/@files/LincsPSP_rerun_LINCS_P100_DIA_Plate46_annotated_minimized_2018-05-02_17-53-48_2021-04-19_20-23-15.log
Files: LincsPSP_rerun_LINCS_P100_DIA_Plate46_annotated_minimized_2018-05-02_17-53-48_2021-04-19_20-23-15.log
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Log File


19 Apr 2021 20:23:15,169 INFO : Re-running LINCS pipeline for:  LINCS_P100_DIA_Plate46_annotated_minimized_2018-05-02_17-53-48
19 Apr 2021 20:23:15,170 INFO : =======================================
19 Apr 2021 20:30:10,227 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
19 Apr 2021 20:30:10,229 INFO : Starting task to create L2 GCT for LINCS_P100_DIA_Plate46_annotated_minimized_2018-05-02_17-53-48.sky.zip
19 Apr 2021 20:30:10,234 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
19 Apr 2021 20:30:10,254 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/adfbf108-80f5-4071-b4e8-b02720f053c8/status
19 Apr 2021 20:30:30,276 INFO : Cromwell job status: Running
19 Apr 2021 20:31:30,334 INFO : Cromwell job status: Succeeded
19 Apr 2021 20:31:30,334 INFO : Cromwell job completed successfully
19 Apr 2021 20:31:30,335 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
19 Apr 2021 20:54:53,168 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
19 Apr 2021 20:54:53,169 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate46_annotated_minimized_2018-05-02_17-53-48
19 Apr 2021 20:54:53,169 INFO : Resubmitting job for runId: 31218, name: LINCS_P100_DIA_Plate46_annotated_minimized_2018-05-02_17-53-48
19 Apr 2021 20:54:53,169 INFO : Old job details: 
19 Apr 2021 20:54:53,169 INFO : Id: 38
19 Apr 2021 20:54:53,170 INFO : Pipeline job Id: 68163
19 Apr 2021 20:54:53,170 INFO : Run Id: 31218
19 Apr 2021 20:54:53,170 INFO : PSP Job Id: 5cfd47e0344c151e38c98d5e
19 Apr 2021 20:54:53,170 INFO : PSP Job name: LINCS_P100_DIA_Plate46_annotated_minimized_2018-05-02_17-53-48
19 Apr 2021 20:54:53,170 INFO : PSP Job status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 20:54:53,170 INFO : JSON: {"level 4":{"s3":{"url":"s3://proteomics.clue.io/psp/level4/LINCS_P100_DIA_Plate46_annotated_minimized_2018-05-02_17-53-48_LVL4.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate46_annotated_minimized_2018-05-02_17-53-48_LVL4.gct"}},"assay":"P100","created":"2019-06-09T17:54:40.024Z","name":"LINCS_P100_DIA_Plate46_annotated_minimized_2018-05-02_17-53-48","id":"5cfd47e0344c151e38c98d5e","last_modified":"2019-06-09T17:55:12.326Z","config":{"s3":{"url":"s3://proteomics.clue.io/psp/config/LINCS_P100_DIA_Plate46_annotated_minimized_2018-05-02_17-53-48.cfg"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate46_annotated_minimized_2018-05-02_17-53-48.cfg"}},"level 2":{"s3":{"url":"s3://proteomics.clue.io/psp/level2/LINCS_P100_DIA_Plate46_annotated_minimized_2018-05-02_17-53-48_LVL2.gct"},"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=31218&remote=true&reportName=GCT%20File%20P100"}},"status":"POUR : succeeded in uploading all GCTs to Panorama","level 3":{"s3":{"url":"s3://proteomics.clue.io/psp/level3/LINCS_P100_DIA_Plate46_annotated_minimized_2018-05-02_17-53-48_LVL3.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate46_annotated_minimized_2018-05-02_17-53-48_LVL3.gct"}}}
19 Apr 2021 20:54:53,170 INFO : Resubmitting...
19 Apr 2021 20:54:53,172 INFO : Looking for existing job with name LINCS_P100_DIA_Plate46_annotated_minimized_2018-05-02_17-53-48
19 Apr 2021 20:54:53,309 INFO : Job with name LINCS_P100_DIA_Plate46_annotated_minimized_2018-05-02_17-53-48exists.
19 Apr 2021 20:54:53,309 INFO : Looking for existing job with name LINCS_P100_DIA_Plate46_annotated_minimized_2018-05-02_17-53-48_2
19 Apr 2021 20:54:53,443 INFO : PSP job name: LINCS_P100_DIA_Plate46_annotated_minimized_2018-05-02_17-53-48_2
19 Apr 2021 20:54:53,444 INFO : Sending JSON:
19 Apr 2021 20:54:53,444 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate46_annotated_minimized_2018-05-02_17-53-48_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_DIA_Plate46_annotated_minimized_2018-05-02_17-53-48_2",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate46_annotated_minimized_2018-05-02_17-53-48.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate46_annotated_minimized_2018-05-02_17-53-48.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate46_annotated_minimized_2018-05-02_17-53-48_LVL3.gct"
  }}
}
19 Apr 2021 20:54:53,446 INFO : Sending POST request to https://api.clue.io/api/psp
19 Apr 2021 20:54:53,676 INFO : Response code - 200
19 Apr 2021 20:54:53,676 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate46_annotated_minimized_2018-05-02_17-53-48_2","assay":"P100","status":"Waiting_To_Download","id":"607e508d77d01b0017d7917d","created":"2021-04-20T03:54:53.524Z","last_modified":"2021-04-20T03:54:53.524Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate46_annotated_minimized_2018-05-02_17-53-48.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate46_annotated_minimized_2018-05-02_17-53-48_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate46_annotated_minimized_2018-05-02_17-53-48_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate46_annotated_minimized_2018-05-02_17-53-48.cfg"}}}
19 Apr 2021 20:54:53,676 INFO : Sent POST request to https://api.clue.io/api/psp
19 Apr 2021 20:54:53,678 INFO : Checking status of job 607e508d77d01b0017d7917d
19 Apr 2021 20:54:53,811 INFO : Status: Waiting_To_Download
19 Apr 2021 20:55:13,814 INFO : Checking status of job 607e508d77d01b0017d7917d
19 Apr 2021 20:55:14,099 INFO : Status: created LVL 3 GCT
19 Apr 2021 20:55:34,108 INFO : Checking status of job 607e508d77d01b0017d7917d
19 Apr 2021 20:55:34,551 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 20:55:34,551 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 20:55:34,551 INFO : Finished running LINCS PSP pipeline.
19 Apr 2021 20:55:34,551 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'