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Re-running LINCS pipeline for: LINCS_P100_DIA_Plate23_annotated_minimized_2018-05-02_18-13-55

P100

Job Status

Created: 2021-04-19 20:22:53
Modified: 2021-04-19 20:54:11
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Re-running LINCS pipeline for: LINCS_P100_DIA_Plate23_annotated_minimized_2018-05-02_18-13-55
File Path: /data/labkey/files/LINCS/P100/@files/LincsPSP_rerun_LINCS_P100_DIA_Plate23_annotated_minimized_2018-05-02_18-13-55_2021-04-19_20-22-53.log
Files: LincsPSP_rerun_LINCS_P100_DIA_Plate23_annotated_minimized_2018-05-02_18-13-55_2021-04-19_20-22-53.log
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Log File


19 Apr 2021 20:22:53,491 INFO : Re-running LINCS pipeline for:  LINCS_P100_DIA_Plate23_annotated_minimized_2018-05-02_18-13-55
19 Apr 2021 20:22:53,492 INFO : =======================================
19 Apr 2021 20:27:29,964 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
19 Apr 2021 20:27:29,965 INFO : Starting task to create L2 GCT for LINCS_P100_DIA_Plate23_annotated_minimized_2018-05-02_18-13-55.sky.zip
19 Apr 2021 20:27:29,972 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
19 Apr 2021 20:27:30,000 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/fd70cf8b-a49e-4452-b5d1-69cfb61eb7a6/status
19 Apr 2021 20:27:50,013 INFO : Cromwell job status: Running
19 Apr 2021 20:28:50,064 INFO : Cromwell job status: Succeeded
19 Apr 2021 20:28:50,064 INFO : Cromwell job completed successfully
19 Apr 2021 20:28:50,065 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
19 Apr 2021 20:49:26,961 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
19 Apr 2021 20:49:26,962 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate23_annotated_minimized_2018-05-02_18-13-55
19 Apr 2021 20:49:26,963 INFO : Resubmitting job for runId: 31224, name: LINCS_P100_DIA_Plate23_annotated_minimized_2018-05-02_18-13-55
19 Apr 2021 20:49:26,963 INFO : Old job details: 
19 Apr 2021 20:49:26,963 INFO : Id: 17
19 Apr 2021 20:49:26,963 INFO : Pipeline job Id: 68141
19 Apr 2021 20:49:26,963 INFO : Run Id: 31224
19 Apr 2021 20:49:26,963 INFO : PSP Job Id: 5cfd4473344c151e38c98d49
19 Apr 2021 20:49:26,963 INFO : PSP Job name: LINCS_P100_DIA_Plate23_annotated_minimized_2018-05-02_18-13-55
19 Apr 2021 20:49:26,963 INFO : PSP Job status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 20:49:26,963 INFO : JSON: {"level 4":{"s3":{"url":"s3://proteomics.clue.io/psp/level4/LINCS_P100_DIA_Plate23_annotated_minimized_2018-05-02_18-13-55_LVL4.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate23_annotated_minimized_2018-05-02_18-13-55_LVL4.gct"}},"assay":"P100","created":"2019-06-09T17:40:03.168Z","name":"LINCS_P100_DIA_Plate23_annotated_minimized_2018-05-02_18-13-55","id":"5cfd4473344c151e38c98d49","last_modified":"2019-06-09T17:40:35.104Z","config":{"s3":{"url":"s3://proteomics.clue.io/psp/config/LINCS_P100_DIA_Plate23_annotated_minimized_2018-05-02_18-13-55.cfg"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate23_annotated_minimized_2018-05-02_18-13-55.cfg"}},"level 2":{"s3":{"url":"s3://proteomics.clue.io/psp/level2/LINCS_P100_DIA_Plate23_annotated_minimized_2018-05-02_18-13-55_LVL2.gct"},"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=31224&remote=true&reportName=GCT%20File%20P100"}},"status":"POUR : succeeded in uploading all GCTs to Panorama","level 3":{"s3":{"url":"s3://proteomics.clue.io/psp/level3/LINCS_P100_DIA_Plate23_annotated_minimized_2018-05-02_18-13-55_LVL3.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate23_annotated_minimized_2018-05-02_18-13-55_LVL3.gct"}}}
19 Apr 2021 20:49:26,963 INFO : Resubmitting...
19 Apr 2021 20:49:26,964 INFO : Looking for existing job with name LINCS_P100_DIA_Plate23_annotated_minimized_2018-05-02_18-13-55
19 Apr 2021 20:49:27,102 INFO : Job with name LINCS_P100_DIA_Plate23_annotated_minimized_2018-05-02_18-13-55exists.
19 Apr 2021 20:49:27,102 INFO : Looking for existing job with name LINCS_P100_DIA_Plate23_annotated_minimized_2018-05-02_18-13-55_2
19 Apr 2021 20:49:27,239 INFO : PSP job name: LINCS_P100_DIA_Plate23_annotated_minimized_2018-05-02_18-13-55_2
19 Apr 2021 20:49:27,240 INFO : Sending JSON:
19 Apr 2021 20:49:27,240 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate23_annotated_minimized_2018-05-02_18-13-55_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_DIA_Plate23_annotated_minimized_2018-05-02_18-13-55_2",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate23_annotated_minimized_2018-05-02_18-13-55.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate23_annotated_minimized_2018-05-02_18-13-55.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate23_annotated_minimized_2018-05-02_18-13-55_LVL3.gct"
  }}
}
19 Apr 2021 20:49:27,242 INFO : Sending POST request to https://api.clue.io/api/psp
19 Apr 2021 20:49:27,440 INFO : Response code - 200
19 Apr 2021 20:49:27,440 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate23_annotated_minimized_2018-05-02_18-13-55_2","assay":"P100","status":"Waiting_To_Download","id":"607e4f4777d01b0017d7917b","created":"2021-04-20T03:49:27.320Z","last_modified":"2021-04-20T03:49:27.320Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate23_annotated_minimized_2018-05-02_18-13-55.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate23_annotated_minimized_2018-05-02_18-13-55_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate23_annotated_minimized_2018-05-02_18-13-55_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate23_annotated_minimized_2018-05-02_18-13-55.cfg"}}}
19 Apr 2021 20:49:27,440 INFO : Sent POST request to https://api.clue.io/api/psp
19 Apr 2021 20:49:27,441 INFO : Checking status of job 607e4f4777d01b0017d7917b
19 Apr 2021 20:49:27,578 INFO : Status: Waiting_To_Download
19 Apr 2021 20:49:47,580 INFO : Checking status of job 607e4f4777d01b0017d7917b
19 Apr 2021 20:49:47,872 INFO : Status: created LVL 3 GCT
19 Apr 2021 20:50:07,874 INFO : Checking status of job 607e4f4777d01b0017d7917b
19 Apr 2021 20:50:08,166 INFO : Status: created LVL 3 GCT
19 Apr 2021 20:50:28,168 INFO : Checking status of job 607e4f4777d01b0017d7917b
19 Apr 2021 20:50:28,452 INFO : Status: created LVL 3 GCT
19 Apr 2021 20:50:48,454 INFO : Checking status of job 607e4f4777d01b0017d7917b
19 Apr 2021 20:50:48,816 INFO : Status: created LVL 3 GCT
19 Apr 2021 20:51:08,819 INFO : Checking status of job 607e4f4777d01b0017d7917b
19 Apr 2021 20:51:09,111 INFO : Status: created LVL 3 GCT
19 Apr 2021 20:51:29,114 INFO : Checking status of job 607e4f4777d01b0017d7917b
19 Apr 2021 20:51:29,401 INFO : Status: created LVL 3 GCT
19 Apr 2021 20:51:49,404 INFO : Checking status of job 607e4f4777d01b0017d7917b
19 Apr 2021 20:51:49,696 INFO : Status: created LVL 3 GCT
19 Apr 2021 20:52:09,698 INFO : Checking status of job 607e4f4777d01b0017d7917b
19 Apr 2021 20:52:10,070 INFO : Status: created LVL 3 GCT
19 Apr 2021 20:52:30,072 INFO : Checking status of job 607e4f4777d01b0017d7917b
19 Apr 2021 20:52:30,361 INFO : Status: created LVL 3 GCT
19 Apr 2021 20:52:50,364 INFO : Checking status of job 607e4f4777d01b0017d7917b
19 Apr 2021 20:52:50,733 INFO : Status: created LVL 3 GCT
19 Apr 2021 20:53:10,735 INFO : Checking status of job 607e4f4777d01b0017d7917b
19 Apr 2021 20:53:11,028 INFO : Status: created LVL 3 GCT
19 Apr 2021 20:53:31,031 INFO : Checking status of job 607e4f4777d01b0017d7917b
19 Apr 2021 20:53:31,324 INFO : Status: created LVL 3 GCT
19 Apr 2021 20:53:51,328 INFO : Checking status of job 607e4f4777d01b0017d7917b
19 Apr 2021 20:53:51,621 INFO : Status: created LVL 3 GCT
19 Apr 2021 20:54:11,623 INFO : Checking status of job 607e4f4777d01b0017d7917b
19 Apr 2021 20:54:11,916 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 20:54:11,916 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 20:54:11,916 INFO : Finished running LINCS PSP pipeline.
19 Apr 2021 20:54:11,916 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'