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Re-running LINCS pipeline for: LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02

P100

Job Status

Created: 2021-04-19 20:22:09
Modified: 2021-04-19 20:37:15
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Re-running LINCS pipeline for: LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02
File Path: /data/labkey/files/LINCS/P100/@files/LincsPSP_rerun_LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02_2021-04-19_20-22-09.log
Files: LincsPSP_rerun_LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02_2021-04-19_20-22-09.log
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Log File


19 Apr 2021 20:22:09,160 INFO : Re-running LINCS pipeline for:  LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02
19 Apr 2021 20:22:09,161 INFO : =======================================
19 Apr 2021 20:22:09,234 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
19 Apr 2021 20:22:09,234 INFO : Starting task to create L2 GCT for LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02.sky.zip
19 Apr 2021 20:22:09,243 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
19 Apr 2021 20:22:09,276 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/d672d63c-5efa-4460-a3b3-12193c9e071c/status
19 Apr 2021 20:22:29,291 INFO : Cromwell job status: Running
19 Apr 2021 20:23:29,337 INFO : Cromwell job status: Succeeded
19 Apr 2021 20:23:29,338 INFO : Cromwell job completed successfully
19 Apr 2021 20:23:29,339 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
19 Apr 2021 20:32:50,491 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
19 Apr 2021 20:32:50,492 INFO : Running LINCS PSP pipeline for LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02
19 Apr 2021 20:32:50,492 INFO : Resubmitting job for runId: 31233, name: LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02
19 Apr 2021 20:32:50,492 INFO : Old job details: 
19 Apr 2021 20:32:50,492 INFO : Id: 21
19 Apr 2021 20:32:50,492 INFO : Pipeline job Id: 68145
19 Apr 2021 20:32:50,492 INFO : Run Id: 31233
19 Apr 2021 20:32:50,492 INFO : PSP Job Id: 5cfd4518344c151e38c98d4d
19 Apr 2021 20:32:50,493 INFO : PSP Job name: LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02
19 Apr 2021 20:32:50,493 INFO : PSP Job status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 20:32:50,493 INFO : JSON: {"level 4":{"s3":{"url":"s3://proteomics.clue.io/psp/level4/LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02_LVL4.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02_LVL4.gct"}},"assay":"P100","created":"2019-06-09T17:42:48.633Z","name":"LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02","id":"5cfd4518344c151e38c98d4d","last_modified":"2019-06-09T17:43:24.504Z","config":{"s3":{"url":"s3://proteomics.clue.io/psp/config/LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02.cfg"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02.cfg"}},"level 2":{"s3":{"url":"s3://proteomics.clue.io/psp/level2/LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02_LVL2.gct"},"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=31233&remote=true&reportName=GCT%20File%20P100"}},"status":"POUR : succeeded in uploading all GCTs to Panorama","level 3":{"s3":{"url":"s3://proteomics.clue.io/psp/level3/LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02_LVL3.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02_LVL3.gct"}}}
19 Apr 2021 20:32:50,493 INFO : Resubmitting...
19 Apr 2021 20:32:50,494 INFO : Looking for existing job with name LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02
19 Apr 2021 20:32:50,854 INFO : Job with name LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02exists.
19 Apr 2021 20:32:50,854 INFO : Looking for existing job with name LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02_2
19 Apr 2021 20:32:50,987 INFO : PSP job name: LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02_2
19 Apr 2021 20:32:50,988 INFO : Sending JSON:
19 Apr 2021 20:32:50,988 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02_2",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02_LVL3.gct"
  }}
}
19 Apr 2021 20:32:50,989 INFO : Sending POST request to https://api.clue.io/api/psp
19 Apr 2021 20:32:51,179 INFO : Response code - 200
19 Apr 2021 20:32:51,180 INFO : Response from server: {"name":"LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02_2","assay":"P100","status":"Waiting_To_Download","id":"607e4b6377d01b0017d79170","created":"2021-04-20T03:32:51.065Z","last_modified":"2021-04-20T03:32:51.065Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02.cfg"}}}
19 Apr 2021 20:32:51,180 INFO : Sent POST request to https://api.clue.io/api/psp
19 Apr 2021 20:32:51,181 INFO : Checking status of job 607e4b6377d01b0017d79170
19 Apr 2021 20:32:51,317 INFO : Status: Waiting_To_Download
19 Apr 2021 20:33:11,320 INFO : Checking status of job 607e4b6377d01b0017d79170
19 Apr 2021 20:33:11,609 INFO : Status: created LVL2 GCT
19 Apr 2021 20:33:31,611 INFO : Checking status of job 607e4b6377d01b0017d79170
19 Apr 2021 20:33:31,903 INFO : Status: created LVL2 GCT
19 Apr 2021 20:33:51,905 INFO : Checking status of job 607e4b6377d01b0017d79170
19 Apr 2021 20:33:52,190 INFO : Status: created LVL2 GCT
19 Apr 2021 20:34:12,193 INFO : Checking status of job 607e4b6377d01b0017d79170
19 Apr 2021 20:34:12,569 INFO : Status: created LVL2 GCT
19 Apr 2021 20:34:32,572 INFO : Checking status of job 607e4b6377d01b0017d79170
19 Apr 2021 20:34:32,866 INFO : Status: created LVL2 GCT
19 Apr 2021 20:34:52,870 INFO : Checking status of job 607e4b6377d01b0017d79170
19 Apr 2021 20:34:53,157 INFO : Status: created LVL2 GCT
19 Apr 2021 20:35:13,159 INFO : Checking status of job 607e4b6377d01b0017d79170
19 Apr 2021 20:35:13,448 INFO : Status: created LVL2 GCT
19 Apr 2021 20:35:33,450 INFO : Checking status of job 607e4b6377d01b0017d79170
19 Apr 2021 20:35:33,832 INFO : Status: created LVL2 GCT
19 Apr 2021 20:35:53,835 INFO : Checking status of job 607e4b6377d01b0017d79170
19 Apr 2021 20:35:54,123 INFO : Status: created LVL2 GCT
19 Apr 2021 20:36:14,126 INFO : Checking status of job 607e4b6377d01b0017d79170
19 Apr 2021 20:36:14,504 INFO : Status: created LVL2 GCT
19 Apr 2021 20:36:34,506 INFO : Checking status of job 607e4b6377d01b0017d79170
19 Apr 2021 20:36:34,795 INFO : Status: created LVL2 GCT
19 Apr 2021 20:36:54,797 INFO : Checking status of job 607e4b6377d01b0017d79170
19 Apr 2021 20:36:55,158 INFO : Status: created LVL 3 GCT
19 Apr 2021 20:37:15,160 INFO : Checking status of job 607e4b6377d01b0017d79170
19 Apr 2021 20:37:15,451 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 20:37:15,452 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 20:37:15,452 INFO : Finished running LINCS PSP pipeline.
19 Apr 2021 20:37:15,452 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'