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Re-running LINCS pipeline for: LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47

P100

Job Status

Created: 2021-04-19 19:41:39
Modified: 2021-04-19 20:07:23
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Re-running LINCS pipeline for: LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47
File Path: /data/labkey/files/LINCS/P100/@files/LincsPSP_rerun_LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47_2021-04-19_19-41-39.log
Files: LincsPSP_rerun_LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47_2021-04-19_19-41-39.log
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Log File


19 Apr 2021 19:41:39,958 INFO : Re-running LINCS pipeline for:  LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47
19 Apr 2021 19:41:39,959 INFO : =======================================
19 Apr 2021 19:55:39,480 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
19 Apr 2021 19:55:39,480 INFO : Starting task to create L2 GCT for LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47.sky.zip
19 Apr 2021 19:55:39,488 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
19 Apr 2021 19:55:39,508 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/f178f624-05fa-4f50-bb6a-d8a2e8705263/status
19 Apr 2021 19:55:59,524 INFO : Cromwell job status: Running
19 Apr 2021 19:56:39,554 INFO : Cromwell job status: Succeeded
19 Apr 2021 19:56:49,597 INFO : Cromwell job completed successfully
19 Apr 2021 19:56:49,600 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
19 Apr 2021 20:06:42,460 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
19 Apr 2021 20:06:42,460 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47
19 Apr 2021 20:06:42,460 INFO : Resubmitting job for runId: 31241, name: LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47
19 Apr 2021 20:06:42,460 INFO : Old job details: 
19 Apr 2021 20:06:42,460 INFO : Id: 20
19 Apr 2021 20:06:42,460 INFO : Pipeline job Id: 68144
19 Apr 2021 20:06:42,461 INFO : Run Id: 31241
19 Apr 2021 20:06:42,461 INFO : PSP Job Id: 5cfd44ef344c151e38c98d4c
19 Apr 2021 20:06:42,461 INFO : PSP Job name: LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47
19 Apr 2021 20:06:42,461 INFO : PSP Job status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 20:06:42,461 INFO : JSON: {"level 4":{"s3":{"url":"s3://proteomics.clue.io/psp/level4/LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47_LVL4.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47_LVL4.gct"}},"assay":"P100","created":"2019-06-09T17:42:07.312Z","name":"LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47","id":"5cfd44ef344c151e38c98d4c","last_modified":"2019-06-09T17:42:36.169Z","config":{"s3":{"url":"s3://proteomics.clue.io/psp/config/LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47.cfg"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47.cfg"}},"level 2":{"s3":{"url":"s3://proteomics.clue.io/psp/level2/LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47_LVL2.gct"},"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=31241&remote=true&reportName=GCT%20File%20P100"}},"status":"POUR : succeeded in uploading all GCTs to Panorama","level 3":{"s3":{"url":"s3://proteomics.clue.io/psp/level3/LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47_LVL3.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47_LVL3.gct"}}}
19 Apr 2021 20:06:42,461 INFO : Resubmitting...
19 Apr 2021 20:06:42,463 INFO : Looking for existing job with name LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47
19 Apr 2021 20:06:42,598 INFO : Job with name LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47exists.
19 Apr 2021 20:06:42,598 INFO : Looking for existing job with name LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47_2
19 Apr 2021 20:06:42,732 INFO : PSP job name: LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47_2
19 Apr 2021 20:06:42,732 INFO : Sending JSON:
19 Apr 2021 20:06:42,733 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47_2",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47_LVL3.gct"
  }}
}
19 Apr 2021 20:06:42,735 INFO : Sending POST request to https://api.clue.io/api/psp
19 Apr 2021 20:06:43,002 INFO : Response code - 200
19 Apr 2021 20:06:43,002 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47_2","assay":"P100","status":"Waiting_To_Download","id":"607e4542e1c96f0017d8b870","created":"2021-04-20T03:06:42.810Z","last_modified":"2021-04-20T03:06:42.810Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47.cfg"}}}
19 Apr 2021 20:06:43,003 INFO : Sent POST request to https://api.clue.io/api/psp
19 Apr 2021 20:06:43,004 INFO : Checking status of job 607e4542e1c96f0017d8b870
19 Apr 2021 20:06:43,139 INFO : Status: Waiting_To_Download
19 Apr 2021 20:07:03,142 INFO : Checking status of job 607e4542e1c96f0017d8b870
19 Apr 2021 20:07:03,516 INFO : Status: created LVL 3 GCT
19 Apr 2021 20:07:23,518 INFO : Checking status of job 607e4542e1c96f0017d8b870
19 Apr 2021 20:07:23,803 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 20:07:23,803 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 20:07:23,803 INFO : Finished running LINCS PSP pipeline.
19 Apr 2021 20:07:23,803 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'