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Re-running LINCS pipeline for: LINCS_P100_PRM_Plate29_03H_annotated_minimized_2018-05-02_21-16-28

P100

Job Status

Created: 2021-04-19 19:39:52
Modified: 2021-04-19 20:02:34
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Re-running LINCS pipeline for: LINCS_P100_PRM_Plate29_03H_annotated_minimized_2018-05-02_21-16-28
File Path: /data/labkey/files/LINCS/P100/@files/LincsPSP_rerun_LINCS_P100_PRM_Plate29_03H_annotated_minimized_2018-05-02_21-16-28_2021-04-19_19-39-52.log
Files: LincsPSP_rerun_LINCS_P100_PRM_Plate29_03H_annotated_minimized_2018-05-02_21-16-28_2021-04-19_19-39-52.log
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Log File


19 Apr 2021 19:39:52,914 INFO : Re-running LINCS pipeline for:  LINCS_P100_PRM_Plate29_03H_annotated_minimized_2018-05-02_21-16-28
19 Apr 2021 19:39:52,916 INFO : =======================================
19 Apr 2021 19:41:17,781 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
19 Apr 2021 19:41:17,782 INFO : Starting task to create L2 GCT for LINCS_P100_PRM_Plate29_03H_annotated_minimized_2018-05-02_21-16-28.sky.zip
19 Apr 2021 19:41:17,813 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
19 Apr 2021 19:41:17,831 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/e6ad23a6-162f-41be-aee4-8415e89b85f4/status
19 Apr 2021 19:41:37,847 INFO : Cromwell job status: Running
19 Apr 2021 19:42:37,896 INFO : Cromwell job status: Succeeded
19 Apr 2021 19:42:37,896 INFO : Cromwell job completed successfully
19 Apr 2021 19:42:37,898 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
19 Apr 2021 19:58:09,764 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
19 Apr 2021 19:58:09,764 INFO : Running LINCS PSP pipeline for LINCS_P100_PRM_Plate29_03H_annotated_minimized_2018-05-02_21-16-28
19 Apr 2021 19:58:09,764 INFO : Resubmitting job for runId: 31265, name: LINCS_P100_PRM_Plate29_03H_annotated_minimized_2018-05-02_21-16-28
19 Apr 2021 19:58:09,764 INFO : Old job details: 
19 Apr 2021 19:58:09,765 INFO : Id: 22
19 Apr 2021 19:58:09,765 INFO : Pipeline job Id: 68146
19 Apr 2021 19:58:09,765 INFO : Run Id: 31265
19 Apr 2021 19:58:09,765 INFO : PSP Job Id: 5cfd4541344c151e38c98d4e
19 Apr 2021 19:58:09,765 INFO : PSP Job name: LINCS_P100_PRM_Plate29_03H_annotated_minimized_2018-05-02_21-16-28
19 Apr 2021 19:58:09,765 INFO : PSP Job status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 19:58:09,765 INFO : JSON: {"level 4":{"s3":{"url":"s3://proteomics.clue.io/psp/level4/LINCS_P100_PRM_Plate29_03H_annotated_minimized_2018-05-02_21-16-28_LVL4.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_Plate29_03H_annotated_minimized_2018-05-02_21-16-28_LVL4.gct"}},"assay":"P100","created":"2019-06-09T17:43:29.941Z","name":"LINCS_P100_PRM_Plate29_03H_annotated_minimized_2018-05-02_21-16-28","id":"5cfd4541344c151e38c98d4e","last_modified":"2019-06-09T17:44:00.864Z","config":{"s3":{"url":"s3://proteomics.clue.io/psp/config/LINCS_P100_PRM_Plate29_03H_annotated_minimized_2018-05-02_21-16-28.cfg"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_Plate29_03H_annotated_minimized_2018-05-02_21-16-28.cfg"}},"level 2":{"s3":{"url":"s3://proteomics.clue.io/psp/level2/LINCS_P100_PRM_Plate29_03H_annotated_minimized_2018-05-02_21-16-28_LVL2.gct"},"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=31265&remote=true&reportName=GCT%20File%20P100"}},"status":"POUR : succeeded in uploading all GCTs to Panorama","level 3":{"s3":{"url":"s3://proteomics.clue.io/psp/level3/LINCS_P100_PRM_Plate29_03H_annotated_minimized_2018-05-02_21-16-28_LVL3.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_Plate29_03H_annotated_minimized_2018-05-02_21-16-28_LVL3.gct"}}}
19 Apr 2021 19:58:09,765 INFO : Resubmitting...
19 Apr 2021 19:58:09,767 INFO : Looking for existing job with name LINCS_P100_PRM_Plate29_03H_annotated_minimized_2018-05-02_21-16-28
19 Apr 2021 19:58:10,161 INFO : Job with name LINCS_P100_PRM_Plate29_03H_annotated_minimized_2018-05-02_21-16-28exists.
19 Apr 2021 19:58:10,161 INFO : Looking for existing job with name LINCS_P100_PRM_Plate29_03H_annotated_minimized_2018-05-02_21-16-28_2
19 Apr 2021 19:58:10,298 INFO : PSP job name: LINCS_P100_PRM_Plate29_03H_annotated_minimized_2018-05-02_21-16-28_2
19 Apr 2021 19:58:10,299 INFO : Sending JSON:
19 Apr 2021 19:58:10,301 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_Plate29_03H_annotated_minimized_2018-05-02_21-16-28_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_PRM_Plate29_03H_annotated_minimized_2018-05-02_21-16-28_2",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_Plate29_03H_annotated_minimized_2018-05-02_21-16-28.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_Plate29_03H_annotated_minimized_2018-05-02_21-16-28.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_Plate29_03H_annotated_minimized_2018-05-02_21-16-28_LVL3.gct"
  }}
}
19 Apr 2021 19:58:10,301 INFO : Sending POST request to https://api.clue.io/api/psp
19 Apr 2021 19:58:10,493 INFO : Response code - 200
19 Apr 2021 19:58:10,494 INFO : Response from server: {"name":"LINCS_P100_PRM_Plate29_03H_annotated_minimized_2018-05-02_21-16-28_2","assay":"P100","status":"Waiting_To_Download","id":"607e4342e1c96f0017d8b86b","created":"2021-04-20T02:58:10.379Z","last_modified":"2021-04-20T02:58:10.380Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_Plate29_03H_annotated_minimized_2018-05-02_21-16-28.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_Plate29_03H_annotated_minimized_2018-05-02_21-16-28_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_Plate29_03H_annotated_minimized_2018-05-02_21-16-28_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_Plate29_03H_annotated_minimized_2018-05-02_21-16-28.cfg"}}}
19 Apr 2021 19:58:10,494 INFO : Sent POST request to https://api.clue.io/api/psp
19 Apr 2021 19:58:10,496 INFO : Checking status of job 607e4342e1c96f0017d8b86b
19 Apr 2021 19:58:10,634 INFO : Status: Waiting_To_Download
19 Apr 2021 19:58:30,635 INFO : Checking status of job 607e4342e1c96f0017d8b86b
19 Apr 2021 19:58:30,928 INFO : Status: created LVL2 GCT
19 Apr 2021 19:58:50,931 INFO : Checking status of job 607e4342e1c96f0017d8b86b
19 Apr 2021 19:58:51,223 INFO : Status: created LVL2 GCT
19 Apr 2021 19:59:11,226 INFO : Checking status of job 607e4342e1c96f0017d8b86b
19 Apr 2021 19:59:11,516 INFO : Status: created LVL2 GCT
19 Apr 2021 19:59:31,518 INFO : Checking status of job 607e4342e1c96f0017d8b86b
19 Apr 2021 19:59:31,802 INFO : Status: created LVL2 GCT
19 Apr 2021 19:59:51,808 INFO : Checking status of job 607e4342e1c96f0017d8b86b
19 Apr 2021 19:59:52,099 INFO : Status: created LVL2 GCT
19 Apr 2021 20:00:12,103 INFO : Checking status of job 607e4342e1c96f0017d8b86b
19 Apr 2021 20:00:12,396 INFO : Status: created LVL2 GCT
19 Apr 2021 20:00:32,399 INFO : Checking status of job 607e4342e1c96f0017d8b86b
19 Apr 2021 20:00:32,688 INFO : Status: created LVL2 GCT
19 Apr 2021 20:00:52,695 INFO : Checking status of job 607e4342e1c96f0017d8b86b
19 Apr 2021 20:00:53,059 INFO : Status: created LVL2 GCT
19 Apr 2021 20:01:13,064 INFO : Checking status of job 607e4342e1c96f0017d8b86b
19 Apr 2021 20:01:13,356 INFO : Status: created LVL2 GCT
19 Apr 2021 20:01:33,361 INFO : Checking status of job 607e4342e1c96f0017d8b86b
19 Apr 2021 20:01:33,664 INFO : Status: created LVL2 GCT
19 Apr 2021 20:01:53,673 INFO : Checking status of job 607e4342e1c96f0017d8b86b
19 Apr 2021 20:01:53,974 INFO : Status: created LVL2 GCT
19 Apr 2021 20:02:13,976 INFO : Checking status of job 607e4342e1c96f0017d8b86b
19 Apr 2021 20:02:14,358 INFO : Status: created LVL 3 GCT
19 Apr 2021 20:02:34,360 INFO : Checking status of job 607e4342e1c96f0017d8b86b
19 Apr 2021 20:02:34,643 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 20:02:34,643 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 20:02:34,643 INFO : Finished running LINCS PSP pipeline.
19 Apr 2021 20:02:34,643 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'