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Re-running LINCS pipeline for: LINCS_P100_DIA_Plate45_annotated_minimized_2018-05-07_10-54-51

P100

Job Status

Created: 2021-04-19 19:04:44
Modified: 2021-04-19 19:35:51
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Re-running LINCS pipeline for: LINCS_P100_DIA_Plate45_annotated_minimized_2018-05-07_10-54-51
File Path: /data/labkey/files/LINCS/P100/@files/LincsPSP_rerun_LINCS_P100_DIA_Plate45_annotated_minimized_2018-05-07_10-54-51_2021-04-19_19-04-43.log
Files: LincsPSP_rerun_LINCS_P100_DIA_Plate45_annotated_minimized_2018-05-07_10-54-51_2021-04-19_19-04-43.log
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Log File


19 Apr 2021 19:04:44,593 INFO : Re-running LINCS pipeline for:  LINCS_P100_DIA_Plate45_annotated_minimized_2018-05-07_10-54-51
19 Apr 2021 19:04:44,594 INFO : =======================================
19 Apr 2021 19:12:26,521 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
19 Apr 2021 19:12:26,521 INFO : Starting task to create L2 GCT for LINCS_P100_DIA_Plate45_annotated_minimized_2018-05-07_10-54-51.sky.zip
19 Apr 2021 19:12:26,526 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
19 Apr 2021 19:12:26,547 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/e7e47b09-958c-4322-ab08-03ee49ead990/status
19 Apr 2021 19:12:46,565 INFO : Cromwell job status: Running
19 Apr 2021 19:13:26,603 INFO : Cromwell job status: Succeeded
19 Apr 2021 19:13:26,603 INFO : Cromwell job completed successfully
19 Apr 2021 19:13:26,605 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
19 Apr 2021 19:35:01,581 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
19 Apr 2021 19:35:01,581 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate45_annotated_minimized_2018-05-07_10-54-51
19 Apr 2021 19:35:01,581 INFO : Resubmitting job for runId: 31522, name: LINCS_P100_DIA_Plate45_annotated_minimized_2018-05-07_10-54-51
19 Apr 2021 19:35:01,581 INFO : Old job details: 
19 Apr 2021 19:35:01,581 INFO : Id: 37
19 Apr 2021 19:35:01,581 INFO : Pipeline job Id: 68162
19 Apr 2021 19:35:01,582 INFO : Run Id: 31522
19 Apr 2021 19:35:01,582 INFO : PSP Job Id: 5cfd47b6344c151e38c98d5d
19 Apr 2021 19:35:01,583 INFO : PSP Job name: LINCS_P100_DIA_Plate45_annotated_minimized_2018-05-07_10-54-51
19 Apr 2021 19:35:01,583 INFO : PSP Job status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 19:35:01,583 INFO : JSON: {"level 4":{"s3":{"url":"s3://proteomics.clue.io/psp/level4/LINCS_P100_DIA_Plate45_annotated_minimized_2018-05-07_10-54-51_LVL4.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate45_annotated_minimized_2018-05-07_10-54-51_LVL4.gct"}},"assay":"P100","created":"2019-06-09T17:53:58.704Z","name":"LINCS_P100_DIA_Plate45_annotated_minimized_2018-05-07_10-54-51","id":"5cfd47b6344c151e38c98d5d","last_modified":"2019-06-09T17:54:30.304Z","config":{"s3":{"url":"s3://proteomics.clue.io/psp/config/LINCS_P100_DIA_Plate45_annotated_minimized_2018-05-07_10-54-51.cfg"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate45_annotated_minimized_2018-05-07_10-54-51.cfg"}},"level 2":{"s3":{"url":"s3://proteomics.clue.io/psp/level2/LINCS_P100_DIA_Plate45_annotated_minimized_2018-05-07_10-54-51_LVL2.gct"},"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=31522&remote=true&reportName=GCT%20File%20P100"}},"status":"POUR : succeeded in uploading all GCTs to Panorama","level 3":{"s3":{"url":"s3://proteomics.clue.io/psp/level3/LINCS_P100_DIA_Plate45_annotated_minimized_2018-05-07_10-54-51_LVL3.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate45_annotated_minimized_2018-05-07_10-54-51_LVL3.gct"}}}
19 Apr 2021 19:35:01,583 INFO : Resubmitting...
19 Apr 2021 19:35:01,585 INFO : Looking for existing job with name LINCS_P100_DIA_Plate45_annotated_minimized_2018-05-07_10-54-51
19 Apr 2021 19:35:01,728 INFO : Job with name LINCS_P100_DIA_Plate45_annotated_minimized_2018-05-07_10-54-51exists.
19 Apr 2021 19:35:01,728 INFO : Looking for existing job with name LINCS_P100_DIA_Plate45_annotated_minimized_2018-05-07_10-54-51_2
19 Apr 2021 19:35:01,867 INFO : PSP job name: LINCS_P100_DIA_Plate45_annotated_minimized_2018-05-07_10-54-51_2
19 Apr 2021 19:35:01,868 INFO : Sending JSON:
19 Apr 2021 19:35:01,868 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate45_annotated_minimized_2018-05-07_10-54-51_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_DIA_Plate45_annotated_minimized_2018-05-07_10-54-51_2",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate45_annotated_minimized_2018-05-07_10-54-51.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate45_annotated_minimized_2018-05-07_10-54-51.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate45_annotated_minimized_2018-05-07_10-54-51_LVL3.gct"
  }}
}
19 Apr 2021 19:35:01,870 INFO : Sending POST request to https://api.clue.io/api/psp
19 Apr 2021 19:35:02,165 INFO : Response code - 200
19 Apr 2021 19:35:02,165 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate45_annotated_minimized_2018-05-07_10-54-51_2","assay":"P100","status":"Waiting_To_Download","id":"607e3dd5e1c96f0017d8b864","created":"2021-04-20T02:35:01.947Z","last_modified":"2021-04-20T02:35:01.947Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate45_annotated_minimized_2018-05-07_10-54-51.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate45_annotated_minimized_2018-05-07_10-54-51_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate45_annotated_minimized_2018-05-07_10-54-51_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate45_annotated_minimized_2018-05-07_10-54-51.cfg"}}}
19 Apr 2021 19:35:02,166 INFO : Sent POST request to https://api.clue.io/api/psp
19 Apr 2021 19:35:02,167 INFO : Checking status of job 607e3dd5e1c96f0017d8b864
19 Apr 2021 19:35:02,308 INFO : Status: Waiting_To_Download
19 Apr 2021 19:35:22,310 INFO : Checking status of job 607e3dd5e1c96f0017d8b864
19 Apr 2021 19:35:22,598 INFO : Status: created LVL 3 GCT
19 Apr 2021 19:35:42,601 INFO : Checking status of job 607e3dd5e1c96f0017d8b864
19 Apr 2021 19:35:51,269 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 19:35:51,270 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 19:35:51,270 INFO : Finished running LINCS PSP pipeline.
19 Apr 2021 19:35:51,270 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'