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Re-running LINCS pipeline for: LINCS_P100_PRM_Plate35_annotated_minimized_2018-05-07_11-23-45

P100

Job Status

Created: 2021-04-19 19:04:35
Modified: 2021-04-19 19:35:01
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Re-running LINCS pipeline for: LINCS_P100_PRM_Plate35_annotated_minimized_2018-05-07_11-23-45
File Path: /data/labkey/files/LINCS/P100/@files/LincsPSP_rerun_LINCS_P100_PRM_Plate35_annotated_minimized_2018-05-07_11-23-45_2021-04-19_19-04-34.log
Files: LincsPSP_rerun_LINCS_P100_PRM_Plate35_annotated_minimized_2018-05-07_11-23-45_2021-04-19_19-04-34.log
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Log File


19 Apr 2021 19:04:35,081 INFO : Re-running LINCS pipeline for:  LINCS_P100_PRM_Plate35_annotated_minimized_2018-05-07_11-23-45
19 Apr 2021 19:04:35,082 INFO : =======================================
19 Apr 2021 19:10:46,394 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
19 Apr 2021 19:10:46,394 INFO : Starting task to create L2 GCT for LINCS_P100_PRM_Plate35_annotated_minimized_2018-05-07_11-23-45.sky.zip
19 Apr 2021 19:10:46,401 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
19 Apr 2021 19:10:46,421 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/ff74d914-4f1a-4f84-98f8-7f0ff3b2870b/status
19 Apr 2021 19:11:06,433 INFO : Cromwell job status: Running
19 Apr 2021 19:12:26,504 INFO : Cromwell job status: Succeeded
19 Apr 2021 19:12:26,504 INFO : Cromwell job completed successfully
19 Apr 2021 19:12:26,505 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
19 Apr 2021 19:30:42,126 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
19 Apr 2021 19:30:42,126 INFO : Running LINCS PSP pipeline for LINCS_P100_PRM_Plate35_annotated_minimized_2018-05-07_11-23-45
19 Apr 2021 19:30:42,127 INFO : Resubmitting job for runId: 31525, name: LINCS_P100_PRM_Plate35_annotated_minimized_2018-05-07_11-23-45
19 Apr 2021 19:30:42,127 INFO : Old job details: 
19 Apr 2021 19:30:42,127 INFO : Id: 30
19 Apr 2021 19:30:42,127 INFO : Pipeline job Id: 68155
19 Apr 2021 19:30:42,127 INFO : Run Id: 31525
19 Apr 2021 19:30:42,127 INFO : PSP Job Id: 5cfd4695344c151e38c98d56
19 Apr 2021 19:30:42,127 INFO : PSP Job name: LINCS_P100_PRM_Plate35_annotated_minimized_2018-05-07_11-23-45
19 Apr 2021 19:30:42,127 INFO : PSP Job status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 19:30:42,127 INFO : JSON: {"level 4":{"s3":{"url":"s3://proteomics.clue.io/psp/level4/LINCS_P100_PRM_Plate35_annotated_minimized_2018-05-07_11-23-45_LVL4.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_Plate35_annotated_minimized_2018-05-07_11-23-45_LVL4.gct"}},"assay":"P100","created":"2019-06-09T17:49:09.404Z","name":"LINCS_P100_PRM_Plate35_annotated_minimized_2018-05-07_11-23-45","id":"5cfd4695344c151e38c98d56","last_modified":"2019-06-09T17:49:35.728Z","config":{"s3":{"url":"s3://proteomics.clue.io/psp/config/LINCS_P100_PRM_Plate35_annotated_minimized_2018-05-07_11-23-45.cfg"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_Plate35_annotated_minimized_2018-05-07_11-23-45.cfg"}},"level 2":{"s3":{"url":"s3://proteomics.clue.io/psp/level2/LINCS_P100_PRM_Plate35_annotated_minimized_2018-05-07_11-23-45_LVL2.gct"},"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=31525&remote=true&reportName=GCT%20File%20P100"}},"status":"POUR : succeeded in uploading all GCTs to Panorama","level 3":{"s3":{"url":"s3://proteomics.clue.io/psp/level3/LINCS_P100_PRM_Plate35_annotated_minimized_2018-05-07_11-23-45_LVL3.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_Plate35_annotated_minimized_2018-05-07_11-23-45_LVL3.gct"}}}
19 Apr 2021 19:30:42,128 INFO : Resubmitting...
19 Apr 2021 19:30:42,129 INFO : Looking for existing job with name LINCS_P100_PRM_Plate35_annotated_minimized_2018-05-07_11-23-45
19 Apr 2021 19:30:42,265 INFO : Job with name LINCS_P100_PRM_Plate35_annotated_minimized_2018-05-07_11-23-45exists.
19 Apr 2021 19:30:42,265 INFO : Looking for existing job with name LINCS_P100_PRM_Plate35_annotated_minimized_2018-05-07_11-23-45_2
19 Apr 2021 19:30:42,400 INFO : PSP job name: LINCS_P100_PRM_Plate35_annotated_minimized_2018-05-07_11-23-45_2
19 Apr 2021 19:30:42,401 INFO : Sending JSON:
19 Apr 2021 19:30:42,401 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_Plate35_annotated_minimized_2018-05-07_11-23-45_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_PRM_Plate35_annotated_minimized_2018-05-07_11-23-45_2",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_Plate35_annotated_minimized_2018-05-07_11-23-45.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_Plate35_annotated_minimized_2018-05-07_11-23-45.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_Plate35_annotated_minimized_2018-05-07_11-23-45_LVL3.gct"
  }}
}
19 Apr 2021 19:30:42,404 INFO : Sending POST request to https://api.clue.io/api/psp
19 Apr 2021 19:30:42,630 INFO : Response code - 200
19 Apr 2021 19:30:42,631 INFO : Response from server: {"name":"LINCS_P100_PRM_Plate35_annotated_minimized_2018-05-07_11-23-45_2","assay":"P100","status":"Waiting_To_Download","id":"607e3cd2e1c96f0017d8b85f","created":"2021-04-20T02:30:42.480Z","last_modified":"2021-04-20T02:30:42.480Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_Plate35_annotated_minimized_2018-05-07_11-23-45.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_Plate35_annotated_minimized_2018-05-07_11-23-45_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_Plate35_annotated_minimized_2018-05-07_11-23-45_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_Plate35_annotated_minimized_2018-05-07_11-23-45.cfg"}}}
19 Apr 2021 19:30:42,631 INFO : Sent POST request to https://api.clue.io/api/psp
19 Apr 2021 19:30:42,632 INFO : Checking status of job 607e3cd2e1c96f0017d8b85f
19 Apr 2021 19:30:42,766 INFO : Status: Waiting_To_Download
19 Apr 2021 19:31:02,768 INFO : Checking status of job 607e3cd2e1c96f0017d8b85f
19 Apr 2021 19:31:03,057 INFO : Status: created LVL 3 GCT
19 Apr 2021 19:31:23,059 INFO : Checking status of job 607e3cd2e1c96f0017d8b85f
19 Apr 2021 19:31:23,510 INFO : Status: created LVL 3 GCT
19 Apr 2021 19:31:43,512 INFO : Checking status of job 607e3cd2e1c96f0017d8b85f
19 Apr 2021 19:31:52,141 INFO : Status: created LVL 3 GCT
19 Apr 2021 19:32:12,144 INFO : Checking status of job 607e3cd2e1c96f0017d8b85f
19 Apr 2021 19:32:12,435 INFO : Status: created LVL 3 GCT
19 Apr 2021 19:32:32,437 INFO : Checking status of job 607e3cd2e1c96f0017d8b85f
19 Apr 2021 19:32:32,727 INFO : Status: created LVL 3 GCT
19 Apr 2021 19:32:52,730 INFO : Checking status of job 607e3cd2e1c96f0017d8b85f
19 Apr 2021 19:33:02,346 INFO : Status: created LVL 3 GCT
19 Apr 2021 19:33:22,348 INFO : Checking status of job 607e3cd2e1c96f0017d8b85f
19 Apr 2021 19:33:22,637 INFO : Status: created LVL 3 GCT
19 Apr 2021 19:33:42,639 INFO : Checking status of job 607e3cd2e1c96f0017d8b85f
19 Apr 2021 19:33:42,928 INFO : Status: created LVL 3 GCT
19 Apr 2021 19:34:02,930 INFO : Checking status of job 607e3cd2e1c96f0017d8b85f
19 Apr 2021 19:34:12,378 INFO : Status: created LVL 3 GCT
19 Apr 2021 19:34:32,382 INFO : Checking status of job 607e3cd2e1c96f0017d8b85f
19 Apr 2021 19:34:41,256 INFO : Status: created LVL 4 GCT
19 Apr 2021 19:35:01,258 INFO : Checking status of job 607e3cd2e1c96f0017d8b85f
19 Apr 2021 19:35:01,551 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 19:35:01,552 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 19:35:01,552 INFO : Finished running LINCS PSP pipeline.
19 Apr 2021 19:35:01,552 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'