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Re-running LINCS pipeline for: LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13

P100

Job Status

Created: 2021-04-19 19:03:25
Modified: 2021-04-19 19:28:30
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Re-running LINCS pipeline for: LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13
File Path: /data/labkey/files/LINCS/P100/@files/LincsPSP_rerun_LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13_2021-04-19_19-03-25.log
Files: LincsPSP_rerun_LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13_2021-04-19_19-03-25.log
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Log File


19 Apr 2021 19:03:25,910 INFO : Re-running LINCS pipeline for:  LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13
19 Apr 2021 19:03:25,911 INFO : =======================================
19 Apr 2021 19:04:54,094 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
19 Apr 2021 19:04:54,094 INFO : Starting task to create L2 GCT for LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13.sky.zip
19 Apr 2021 19:04:54,101 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
19 Apr 2021 19:04:54,122 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/51279b03-5718-4530-801a-3816b1a22df4/status
19 Apr 2021 19:05:14,142 INFO : Cromwell job status: Running
19 Apr 2021 19:06:14,202 INFO : Cromwell job status: Succeeded
19 Apr 2021 19:06:14,202 INFO : Cromwell job completed successfully
19 Apr 2021 19:06:14,203 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
19 Apr 2021 19:23:49,379 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
19 Apr 2021 19:23:49,381 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13
19 Apr 2021 19:23:49,381 INFO : Resubmitting job for runId: 38595, name: LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13
19 Apr 2021 19:23:49,381 INFO : Old job details: 
19 Apr 2021 19:23:49,381 INFO : Id: 53
19 Apr 2021 19:23:49,381 INFO : Pipeline job Id: 68178
19 Apr 2021 19:23:49,381 INFO : Run Id: 38595
19 Apr 2021 19:23:49,381 INFO : PSP Job Id: 5cfd4aee344c151e38c98d6d
19 Apr 2021 19:23:49,382 INFO : PSP Job name: LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13
19 Apr 2021 19:23:49,382 INFO : PSP Job status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 19:23:49,382 INFO : JSON: {"level 4":{"s3":{"url":"s3://proteomics.clue.io/psp/level4/LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13_LVL4.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13_LVL4.gct"}},"assay":"P100","created":"2019-06-09T18:07:42.812Z","name":"LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13","id":"5cfd4aee344c151e38c98d6d","last_modified":"2019-06-09T18:08:12.061Z","config":{"s3":{"url":"s3://proteomics.clue.io/psp/config/LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13.cfg"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13.cfg"}},"level 2":{"s3":{"url":"s3://proteomics.clue.io/psp/level2/LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13_LVL2.gct"},"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=38595&remote=true&reportName=GCT%20File%20P100"}},"status":"POUR : succeeded in uploading all GCTs to Panorama","level 3":{"s3":{"url":"s3://proteomics.clue.io/psp/level3/LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13_LVL3.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13_LVL3.gct"}}}
19 Apr 2021 19:23:49,382 INFO : Resubmitting...
19 Apr 2021 19:23:49,383 INFO : Looking for existing job with name LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13
19 Apr 2021 19:23:49,777 INFO : Job with name LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13exists.
19 Apr 2021 19:23:49,777 INFO : Looking for existing job with name LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13_2
19 Apr 2021 19:23:49,913 INFO : PSP job name: LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13_2
19 Apr 2021 19:23:49,914 INFO : Sending JSON:
19 Apr 2021 19:23:49,914 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13_2",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13_LVL3.gct"
  }}
}
19 Apr 2021 19:23:49,916 INFO : Sending POST request to https://api.clue.io/api/psp
19 Apr 2021 19:23:50,110 INFO : Response code - 200
19 Apr 2021 19:23:50,111 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13_2","assay":"P100","status":"Waiting_To_Download","id":"607e3b35e1c96f0017d8b85b","created":"2021-04-20T02:23:49.995Z","last_modified":"2021-04-20T02:23:49.995Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13.cfg"}}}
19 Apr 2021 19:23:50,111 INFO : Sent POST request to https://api.clue.io/api/psp
19 Apr 2021 19:23:50,113 INFO : Checking status of job 607e3b35e1c96f0017d8b85b
19 Apr 2021 19:23:50,248 INFO : Status: Waiting_To_Download
19 Apr 2021 19:24:10,252 INFO : Checking status of job 607e3b35e1c96f0017d8b85b
19 Apr 2021 19:24:10,537 INFO : Status: created LVL2 GCT
19 Apr 2021 19:24:30,539 INFO : Checking status of job 607e3b35e1c96f0017d8b85b
19 Apr 2021 19:24:40,372 INFO : Status: created LVL2 GCT
19 Apr 2021 19:25:00,374 INFO : Checking status of job 607e3b35e1c96f0017d8b85b
19 Apr 2021 19:25:00,666 INFO : Status: created LVL2 GCT
19 Apr 2021 19:25:20,669 INFO : Checking status of job 607e3b35e1c96f0017d8b85b
19 Apr 2021 19:25:21,036 INFO : Status: created LVL2 GCT
19 Apr 2021 19:25:41,037 INFO : Checking status of job 607e3b35e1c96f0017d8b85b
19 Apr 2021 19:25:50,497 INFO : Status: created LVL2 GCT
19 Apr 2021 19:26:10,499 INFO : Checking status of job 607e3b35e1c96f0017d8b85b
19 Apr 2021 19:26:10,789 INFO : Status: created LVL2 GCT
19 Apr 2021 19:26:30,792 INFO : Checking status of job 607e3b35e1c96f0017d8b85b
19 Apr 2021 19:26:31,085 INFO : Status: created LVL2 GCT
19 Apr 2021 19:26:51,087 INFO : Checking status of job 607e3b35e1c96f0017d8b85b
19 Apr 2021 19:27:00,608 INFO : Status: created LVL2 GCT
19 Apr 2021 19:27:20,612 INFO : Checking status of job 607e3b35e1c96f0017d8b85b
19 Apr 2021 19:27:20,904 INFO : Status: created LVL2 GCT
19 Apr 2021 19:27:40,906 INFO : Checking status of job 607e3b35e1c96f0017d8b85b
19 Apr 2021 19:27:41,277 INFO : Status: created LVL2 GCT
19 Apr 2021 19:28:01,281 INFO : Checking status of job 607e3b35e1c96f0017d8b85b
19 Apr 2021 19:28:10,643 INFO : Status: created LVL 4 GCT
19 Apr 2021 19:28:30,645 INFO : Checking status of job 607e3b35e1c96f0017d8b85b
19 Apr 2021 19:28:30,935 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 19:28:30,935 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 19:28:30,935 INFO : Finished running LINCS PSP pipeline.
19 Apr 2021 19:28:30,935 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'