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Re-running LINCS pipeline for: LINCS_P100_DIA_Plate74_annotated_minimized_2019-03-27_16-18-55

P100

Job Status

Created: 2021-04-19 18:18:12
Modified: 2021-04-19 18:55:33
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Re-running LINCS pipeline for: LINCS_P100_DIA_Plate74_annotated_minimized_2019-03-27_16-18-55
File Path: /data/labkey/files/LINCS/P100/@files/LincsPSP_rerun_LINCS_P100_DIA_Plate74_annotated_minimized_2019-03-27_16-18-55_2021-04-19_18-18-11.log
Files: LincsPSP_rerun_LINCS_P100_DIA_Plate74_annotated_minimized_2019-03-27_16-18-55_2021-04-19_18-18-11.log
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Log File


19 Apr 2021 18:18:12,243 INFO : Re-running LINCS pipeline for:  LINCS_P100_DIA_Plate74_annotated_minimized_2019-03-27_16-18-55
19 Apr 2021 18:18:12,244 INFO : =======================================
19 Apr 2021 18:33:11,246 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
19 Apr 2021 18:33:11,247 INFO : Starting task to create L2 GCT for LINCS_P100_DIA_Plate74_annotated_minimized_2019-03-27_16-18-55.sky.zip
19 Apr 2021 18:33:11,256 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
19 Apr 2021 18:33:11,279 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/4fe724c5-6042-40ae-9b52-7e552647ecc7/status
19 Apr 2021 18:33:31,291 INFO : Cromwell job status: Running
19 Apr 2021 18:34:31,344 INFO : Cromwell job status: Succeeded
19 Apr 2021 18:34:33,574 INFO : Cromwell job completed successfully
19 Apr 2021 18:34:33,575 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
19 Apr 2021 18:54:44,145 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
19 Apr 2021 18:54:44,146 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate74_annotated_minimized_2019-03-27_16-18-55
19 Apr 2021 18:54:44,147 INFO : Resubmitting job for runId: 60766, name: LINCS_P100_DIA_Plate74_annotated_minimized_2019-03-27_16-18-55
19 Apr 2021 18:54:44,147 INFO : Old job details: 
19 Apr 2021 18:54:44,147 INFO : Id: 57
19 Apr 2021 18:54:44,147 INFO : Pipeline job Id: 68182
19 Apr 2021 18:54:44,147 INFO : Run Id: 60766
19 Apr 2021 18:54:44,147 INFO : PSP Job Id: 5cfd4b94344c151e38c98d71
19 Apr 2021 18:54:44,147 INFO : PSP Job name: LINCS_P100_DIA_Plate74_annotated_minimized_2019-03-27_16-18-55
19 Apr 2021 18:54:44,147 INFO : PSP Job status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 18:54:44,147 INFO : JSON: {"level 4":{"s3":{"url":"s3://proteomics.clue.io/psp/level4/LINCS_P100_DIA_Plate74_annotated_minimized_2019-03-27_16-18-55_LVL4.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate74_annotated_minimized_2019-03-27_16-18-55_LVL4.gct"}},"assay":"P100","created":"2019-06-09T18:10:28.069Z","name":"LINCS_P100_DIA_Plate74_annotated_minimized_2019-03-27_16-18-55","id":"5cfd4b94344c151e38c98d71","last_modified":"2019-06-09T18:11:04.056Z","config":{"s3":{"url":"s3://proteomics.clue.io/psp/config/LINCS_P100_DIA_Plate74_annotated_minimized_2019-03-27_16-18-55.cfg"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate74_annotated_minimized_2019-03-27_16-18-55.cfg"}},"level 2":{"s3":{"url":"s3://proteomics.clue.io/psp/level2/LINCS_P100_DIA_Plate74_annotated_minimized_2019-03-27_16-18-55_LVL2.gct"},"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=60766&remote=true&reportName=GCT%20File%20P100"}},"status":"POUR : succeeded in uploading all GCTs to Panorama","level 3":{"s3":{"url":"s3://proteomics.clue.io/psp/level3/LINCS_P100_DIA_Plate74_annotated_minimized_2019-03-27_16-18-55_LVL3.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate74_annotated_minimized_2019-03-27_16-18-55_LVL3.gct"}}}
19 Apr 2021 18:54:44,148 INFO : Resubmitting...
19 Apr 2021 18:54:44,150 INFO : Looking for existing job with name LINCS_P100_DIA_Plate74_annotated_minimized_2019-03-27_16-18-55
19 Apr 2021 18:54:44,286 INFO : Job with name LINCS_P100_DIA_Plate74_annotated_minimized_2019-03-27_16-18-55exists.
19 Apr 2021 18:54:44,286 INFO : Looking for existing job with name LINCS_P100_DIA_Plate74_annotated_minimized_2019-03-27_16-18-55_2
19 Apr 2021 18:54:44,421 INFO : PSP job name: LINCS_P100_DIA_Plate74_annotated_minimized_2019-03-27_16-18-55_2
19 Apr 2021 18:54:44,421 INFO : Sending JSON:
19 Apr 2021 18:54:44,421 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate74_annotated_minimized_2019-03-27_16-18-55_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_DIA_Plate74_annotated_minimized_2019-03-27_16-18-55_2",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate74_annotated_minimized_2019-03-27_16-18-55.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate74_annotated_minimized_2019-03-27_16-18-55.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate74_annotated_minimized_2019-03-27_16-18-55_LVL3.gct"
  }}
}
19 Apr 2021 18:54:44,423 INFO : Sending POST request to https://api.clue.io/api/psp
19 Apr 2021 18:54:44,645 INFO : Response code - 200
19 Apr 2021 18:54:44,645 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate74_annotated_minimized_2019-03-27_16-18-55_2","assay":"P100","status":"Waiting_To_Download","id":"607e3464e1c96f0017d8b856","created":"2021-04-20T01:54:44.502Z","last_modified":"2021-04-20T01:54:44.502Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate74_annotated_minimized_2019-03-27_16-18-55.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate74_annotated_minimized_2019-03-27_16-18-55_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate74_annotated_minimized_2019-03-27_16-18-55_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate74_annotated_minimized_2019-03-27_16-18-55.cfg"}}}
19 Apr 2021 18:54:44,645 INFO : Sent POST request to https://api.clue.io/api/psp
19 Apr 2021 18:54:44,647 INFO : Checking status of job 607e3464e1c96f0017d8b856
19 Apr 2021 18:54:44,784 INFO : Status: Waiting_To_Download
19 Apr 2021 18:55:04,788 INFO : Checking status of job 607e3464e1c96f0017d8b856
19 Apr 2021 18:55:12,996 INFO : Status: created LVL 3 GCT
19 Apr 2021 18:55:32,997 INFO : Checking status of job 607e3464e1c96f0017d8b856
19 Apr 2021 18:55:33,292 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 18:55:33,292 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 18:55:33,293 INFO : Finished running LINCS PSP pipeline.
19 Apr 2021 18:55:33,293 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'