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Re-running LINCS pipeline for: LINCS_P100_DIA_Plate76_annotated_minimized_2019-06-07_15-29-16

P100

Job Status

Created: 2021-04-19 18:16:42
Modified: 2021-04-19 18:48:22
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Re-running LINCS pipeline for: LINCS_P100_DIA_Plate76_annotated_minimized_2019-06-07_15-29-16
File Path: /data/labkey/files/LINCS/P100/@files/LincsPSP_rerun_LINCS_P100_DIA_Plate76_annotated_minimized_2019-06-07_15-29-16_2021-04-19_18-16-41.log
Files: LincsPSP_rerun_LINCS_P100_DIA_Plate76_annotated_minimized_2019-06-07_15-29-16_2021-04-19_18-16-41.log
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Log File


19 Apr 2021 18:16:42,490 INFO : Re-running LINCS pipeline for:  LINCS_P100_DIA_Plate76_annotated_minimized_2019-06-07_15-29-16
19 Apr 2021 18:16:42,491 INFO : =======================================
19 Apr 2021 18:21:19,421 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
19 Apr 2021 18:21:19,421 INFO : Starting task to create L2 GCT for LINCS_P100_DIA_Plate76_annotated_minimized_2019-06-07_15-29-16.sky.zip
19 Apr 2021 18:21:19,427 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
19 Apr 2021 18:21:19,446 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/6392b3bf-ce67-49c2-9435-c0ef853cf514/status
19 Apr 2021 18:21:39,461 INFO : Cromwell job status: Running
19 Apr 2021 18:22:59,523 INFO : Cromwell job status: Succeeded
19 Apr 2021 18:22:59,524 INFO : Cromwell job completed successfully
19 Apr 2021 18:22:59,525 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
19 Apr 2021 18:44:20,825 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
19 Apr 2021 18:44:20,827 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate76_annotated_minimized_2019-06-07_15-29-16
19 Apr 2021 18:44:20,827 INFO : Resubmitting job for runId: 67694, name: LINCS_P100_DIA_Plate76_annotated_minimized_2019-06-07_15-29-16
19 Apr 2021 18:44:20,827 INFO : Old job details: 
19 Apr 2021 18:44:20,827 INFO : Id: 60
19 Apr 2021 18:44:20,827 INFO : Pipeline job Id: 68185
19 Apr 2021 18:44:20,827 INFO : Run Id: 67694
19 Apr 2021 18:44:20,827 INFO : PSP Job Id: 5cfd4c10344c151e38c98d74
19 Apr 2021 18:44:20,827 INFO : PSP Job name: LINCS_P100_DIA_Plate76_annotated_minimized_2019-06-07_15-29-16
19 Apr 2021 18:44:20,827 INFO : PSP Job status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 18:44:20,827 INFO : JSON: {"level 4":{"s3":{"url":"s3://proteomics.clue.io/psp/level4/LINCS_P100_DIA_Plate76_annotated_minimized_2019-06-07_15-29-16_LVL4.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate76_annotated_minimized_2019-06-07_15-29-16_LVL4.gct"}},"assay":"P100","created":"2019-06-09T18:12:32.120Z","name":"LINCS_P100_DIA_Plate76_annotated_minimized_2019-06-07_15-29-16","id":"5cfd4c10344c151e38c98d74","last_modified":"2019-06-09T18:12:59.088Z","config":{"s3":{"url":"s3://proteomics.clue.io/psp/config/LINCS_P100_DIA_Plate76_annotated_minimized_2019-06-07_15-29-16.cfg"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate76_annotated_minimized_2019-06-07_15-29-16.cfg"}},"level 2":{"s3":{"url":"s3://proteomics.clue.io/psp/level2/LINCS_P100_DIA_Plate76_annotated_minimized_2019-06-07_15-29-16_LVL2.gct"},"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=67694&remote=true&reportName=GCT%20File%20P100"}},"status":"POUR : succeeded in uploading all GCTs to Panorama","level 3":{"s3":{"url":"s3://proteomics.clue.io/psp/level3/LINCS_P100_DIA_Plate76_annotated_minimized_2019-06-07_15-29-16_LVL3.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate76_annotated_minimized_2019-06-07_15-29-16_LVL3.gct"}}}
19 Apr 2021 18:44:20,828 INFO : Resubmitting...
19 Apr 2021 18:44:20,829 INFO : Looking for existing job with name LINCS_P100_DIA_Plate76_annotated_minimized_2019-06-07_15-29-16
19 Apr 2021 18:44:20,970 INFO : Job with name LINCS_P100_DIA_Plate76_annotated_minimized_2019-06-07_15-29-16exists.
19 Apr 2021 18:44:20,970 INFO : Looking for existing job with name LINCS_P100_DIA_Plate76_annotated_minimized_2019-06-07_15-29-16_2
19 Apr 2021 18:44:21,109 INFO : PSP job name: LINCS_P100_DIA_Plate76_annotated_minimized_2019-06-07_15-29-16_2
19 Apr 2021 18:44:21,110 INFO : Sending JSON:
19 Apr 2021 18:44:21,110 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate76_annotated_minimized_2019-06-07_15-29-16_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_DIA_Plate76_annotated_minimized_2019-06-07_15-29-16_2",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate76_annotated_minimized_2019-06-07_15-29-16.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate76_annotated_minimized_2019-06-07_15-29-16.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate76_annotated_minimized_2019-06-07_15-29-16_LVL3.gct"
  }}
}
19 Apr 2021 18:44:21,277 INFO : Sending POST request to https://api.clue.io/api/psp
19 Apr 2021 18:44:21,475 INFO : Response code - 200
19 Apr 2021 18:44:21,475 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate76_annotated_minimized_2019-06-07_15-29-16_2","assay":"P100","status":"Waiting_To_Download","id":"607e31f5e1c96f0017d8b84f","created":"2021-04-20T01:44:21.359Z","last_modified":"2021-04-20T01:44:21.359Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate76_annotated_minimized_2019-06-07_15-29-16.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate76_annotated_minimized_2019-06-07_15-29-16_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate76_annotated_minimized_2019-06-07_15-29-16_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate76_annotated_minimized_2019-06-07_15-29-16.cfg"}}}
19 Apr 2021 18:44:21,475 INFO : Sent POST request to https://api.clue.io/api/psp
19 Apr 2021 18:44:21,477 INFO : Checking status of job 607e31f5e1c96f0017d8b84f
19 Apr 2021 18:44:21,619 INFO : Status: Waiting_To_Download
19 Apr 2021 18:44:41,620 INFO : Checking status of job 607e31f5e1c96f0017d8b84f
19 Apr 2021 18:44:41,909 INFO : Status: created LVL2 GCT
19 Apr 2021 18:45:01,911 INFO : Checking status of job 607e31f5e1c96f0017d8b84f
19 Apr 2021 18:45:02,214 INFO : Status: created LVL2 GCT
19 Apr 2021 18:45:30,628 INFO : Checking status of job 607e31f5e1c96f0017d8b84f
19 Apr 2021 18:45:31,014 INFO : Status: created LVL2 GCT
19 Apr 2021 18:46:01,034 INFO : Checking status of job 607e31f5e1c96f0017d8b84f
19 Apr 2021 18:46:01,404 INFO : Status: created LVL2 GCT
19 Apr 2021 18:46:21,409 INFO : Checking status of job 607e31f5e1c96f0017d8b84f
19 Apr 2021 18:46:21,700 INFO : Status: created LVL2 GCT
19 Apr 2021 18:46:41,703 INFO : Checking status of job 607e31f5e1c96f0017d8b84f
19 Apr 2021 18:46:51,411 INFO : Status: created LVL2 GCT
19 Apr 2021 18:47:11,413 INFO : Checking status of job 607e31f5e1c96f0017d8b84f
19 Apr 2021 18:47:11,707 INFO : Status: created LVL2 GCT
19 Apr 2021 18:47:31,710 INFO : Checking status of job 607e31f5e1c96f0017d8b84f
19 Apr 2021 18:47:32,107 INFO : Status: created LVL2 GCT
19 Apr 2021 18:48:01,410 INFO : Checking status of job 607e31f5e1c96f0017d8b84f
19 Apr 2021 18:48:01,704 INFO : Status: created LVL2 GCT
19 Apr 2021 18:48:21,707 INFO : Checking status of job 607e31f5e1c96f0017d8b84f
19 Apr 2021 18:48:22,082 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 18:48:22,082 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 18:48:22,082 INFO : Finished running LINCS PSP pipeline.
19 Apr 2021 18:48:22,082 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'