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Re-running LINCS pipeline for: LINCS_P100_DIA_Plate81a_annotated_minimized_2019-08-07_16-23-33

P100

Job Status

Created: 2021-04-19 17:33:50
Modified: 2021-04-19 18:04:57
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Re-running LINCS pipeline for: LINCS_P100_DIA_Plate81a_annotated_minimized_2019-08-07_16-23-33
File Path: /data/labkey/files/LINCS/P100/@files/LincsPSP_rerun_LINCS_P100_DIA_Plate81a_annotated_minimized_2019-08-07_16-23-33_2021-04-19_17-33-49.log
Files: LincsPSP_rerun_LINCS_P100_DIA_Plate81a_annotated_minimized_2019-08-07_16-23-33_2021-04-19_17-33-49.log
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Log File


19 Apr 2021 17:33:50,654 INFO : Re-running LINCS pipeline for:  LINCS_P100_DIA_Plate81a_annotated_minimized_2019-08-07_16-23-33
19 Apr 2021 17:33:50,655 INFO : =======================================
19 Apr 2021 17:44:11,026 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
19 Apr 2021 17:44:11,027 INFO : Starting task to create L2 GCT for LINCS_P100_DIA_Plate81a_annotated_minimized_2019-08-07_16-23-33.sky.zip
19 Apr 2021 17:44:11,040 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
19 Apr 2021 17:44:11,063 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/6b69ac91-de50-4bea-b2c6-3d3f3f168518/status
19 Apr 2021 17:44:31,085 INFO : Cromwell job status: Running
19 Apr 2021 17:45:11,125 INFO : Cromwell job status: Succeeded
19 Apr 2021 17:45:11,125 INFO : Cromwell job completed successfully
19 Apr 2021 17:45:11,126 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
19 Apr 2021 18:00:25,949 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
19 Apr 2021 18:00:25,950 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate81a_annotated_minimized_2019-08-07_16-23-33
19 Apr 2021 18:00:25,951 INFO : Resubmitting job for runId: 72097, name: LINCS_P100_DIA_Plate81a_annotated_minimized_2019-08-07_16-23-33
19 Apr 2021 18:00:25,951 INFO : Old job details: 
19 Apr 2021 18:00:25,951 INFO : Id: 145
19 Apr 2021 18:00:25,951 INFO : Pipeline job Id: 72613
19 Apr 2021 18:00:25,951 INFO : Run Id: 72097
19 Apr 2021 18:00:25,951 INFO : PSP Job Id: 5d4b958dddc9b61afafad204
19 Apr 2021 18:00:25,951 INFO : PSP Job name: LINCS_P100_DIA_Plate81a_annotated_minimized_2019-08-07_16-23-33_3
19 Apr 2021 18:00:25,951 INFO : PSP Job status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 18:00:25,951 INFO : JSON: {"level 4":{"s3":{"url":"s3://proteomics.clue.io/psp/level4/LINCS_P100_DIA_Plate81a_annotated_minimized_2019-08-07_16-23-33_3_LVL4.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate81a_annotated_minimized_2019-08-07_16-23-33_LVL4.gct"}},"assay":"P100","created":"2019-08-08T03:22:53.714Z","name":"LINCS_P100_DIA_Plate81a_annotated_minimized_2019-08-07_16-23-33_3","id":"5d4b958dddc9b61afafad204","last_modified":"2019-08-08T03:26:06.735Z","config":{"s3":{"url":"s3://proteomics.clue.io/psp/config/LINCS_P100_DIA_Plate81a_annotated_minimized_2019-08-07_16-23-33_3.cfg"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate81a_annotated_minimized_2019-08-07_16-23-33.cfg"}},"level 2":{"s3":{"url":"s3://proteomics.clue.io/psp/level2/LINCS_P100_DIA_Plate81a_annotated_minimized_2019-08-07_16-23-33_3_LVL2.gct"},"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=72097&remote=true&reportName=GCT%20File%20P100"}},"status":"POUR : succeeded in uploading all GCTs to Panorama","level 3":{"s3":{"url":"s3://proteomics.clue.io/psp/level3/LINCS_P100_DIA_Plate81a_annotated_minimized_2019-08-07_16-23-33_3_LVL3.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate81a_annotated_minimized_2019-08-07_16-23-33_LVL3.gct"}}}
19 Apr 2021 18:00:25,952 INFO : Resubmitting...
19 Apr 2021 18:00:25,954 INFO : Looking for existing job with name LINCS_P100_DIA_Plate81a_annotated_minimized_2019-08-07_16-23-33
19 Apr 2021 18:00:26,094 INFO : Job with name LINCS_P100_DIA_Plate81a_annotated_minimized_2019-08-07_16-23-33exists.
19 Apr 2021 18:00:26,094 INFO : Looking for existing job with name LINCS_P100_DIA_Plate81a_annotated_minimized_2019-08-07_16-23-33_2
19 Apr 2021 18:00:26,230 INFO : Job with name LINCS_P100_DIA_Plate81a_annotated_minimized_2019-08-07_16-23-33_2exists.
19 Apr 2021 18:00:26,230 INFO : Looking for existing job with name LINCS_P100_DIA_Plate81a_annotated_minimized_2019-08-07_16-23-33_3
19 Apr 2021 18:00:26,369 INFO : Job with name LINCS_P100_DIA_Plate81a_annotated_minimized_2019-08-07_16-23-33_3exists.
19 Apr 2021 18:00:26,369 INFO : Looking for existing job with name LINCS_P100_DIA_Plate81a_annotated_minimized_2019-08-07_16-23-33_4
19 Apr 2021 18:00:26,503 INFO : PSP job name: LINCS_P100_DIA_Plate81a_annotated_minimized_2019-08-07_16-23-33_4
19 Apr 2021 18:00:26,504 INFO : Sending JSON:
19 Apr 2021 18:00:26,504 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate81a_annotated_minimized_2019-08-07_16-23-33_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_DIA_Plate81a_annotated_minimized_2019-08-07_16-23-33_4",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate81a_annotated_minimized_2019-08-07_16-23-33.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate81a_annotated_minimized_2019-08-07_16-23-33.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate81a_annotated_minimized_2019-08-07_16-23-33_LVL3.gct"
  }}
}
19 Apr 2021 18:00:26,504 INFO : Sending POST request to https://api.clue.io/api/psp
19 Apr 2021 18:00:26,721 INFO : Response code - 200
19 Apr 2021 18:00:26,722 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate81a_annotated_minimized_2019-08-07_16-23-33_4","assay":"P100","status":"Waiting_To_Download","id":"607e27aa77d01b0017d79137","created":"2021-04-20T01:00:26.585Z","last_modified":"2021-04-20T01:00:26.585Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate81a_annotated_minimized_2019-08-07_16-23-33.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate81a_annotated_minimized_2019-08-07_16-23-33_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate81a_annotated_minimized_2019-08-07_16-23-33_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate81a_annotated_minimized_2019-08-07_16-23-33.cfg"}}}
19 Apr 2021 18:00:26,722 INFO : Sent POST request to https://api.clue.io/api/psp
19 Apr 2021 18:00:26,724 INFO : Checking status of job 607e27aa77d01b0017d79137
19 Apr 2021 18:00:26,859 INFO : Status: Waiting_To_Download
19 Apr 2021 18:00:46,861 INFO : Checking status of job 607e27aa77d01b0017d79137
19 Apr 2021 18:00:47,238 INFO : Status: created LVL 3 GCT
19 Apr 2021 18:01:07,239 INFO : Checking status of job 607e27aa77d01b0017d79137
19 Apr 2021 18:01:07,526 INFO : Status: created LVL 3 GCT
19 Apr 2021 18:01:27,530 INFO : Checking status of job 607e27aa77d01b0017d79137
19 Apr 2021 18:01:27,822 INFO : Status: created LVL 3 GCT
19 Apr 2021 18:01:47,824 INFO : Checking status of job 607e27aa77d01b0017d79137
19 Apr 2021 18:01:48,114 INFO : Status: created LVL 3 GCT
19 Apr 2021 18:02:08,115 INFO : Checking status of job 607e27aa77d01b0017d79137
19 Apr 2021 18:02:16,522 INFO : Status: created LVL 3 GCT
19 Apr 2021 18:02:36,525 INFO : Checking status of job 607e27aa77d01b0017d79137
19 Apr 2021 18:02:36,882 INFO : Status: created LVL 3 GCT
19 Apr 2021 18:02:56,884 INFO : Checking status of job 607e27aa77d01b0017d79137
19 Apr 2021 18:02:57,251 INFO : Status: created LVL 3 GCT
19 Apr 2021 18:03:17,252 INFO : Checking status of job 607e27aa77d01b0017d79137
19 Apr 2021 18:03:26,628 INFO : Status: created LVL 3 GCT
19 Apr 2021 18:03:46,630 INFO : Checking status of job 607e27aa77d01b0017d79137
19 Apr 2021 18:03:46,915 INFO : Status: created LVL 3 GCT
19 Apr 2021 18:04:06,918 INFO : Checking status of job 607e27aa77d01b0017d79137
19 Apr 2021 18:04:07,209 INFO : Status: created LVL 3 GCT
19 Apr 2021 18:04:27,210 INFO : Checking status of job 607e27aa77d01b0017d79137
19 Apr 2021 18:04:37,060 INFO : Status: created LVL 4 GCT
19 Apr 2021 18:04:57,068 INFO : Checking status of job 607e27aa77d01b0017d79137
19 Apr 2021 18:04:57,359 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 18:04:57,359 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 18:04:57,359 INFO : Finished running LINCS PSP pipeline.
19 Apr 2021 18:04:57,359 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'