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Re-running LINCS pipeline for: LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35

P100

Job Status

Created: 2021-04-19 16:50:32
Modified: 2021-04-19 17:18:30
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Re-running LINCS pipeline for: LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35
File Path: /data/labkey/files/LINCS/P100/@files/LincsPSP_rerun_LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35_2021-04-19_16-50-31.log
Files: LincsPSP_rerun_LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35_2021-04-19_16-50-31.log
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Log File


19 Apr 2021 16:50:32,026 INFO : Re-running LINCS pipeline for:  LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35
19 Apr 2021 16:50:32,027 INFO : =======================================
19 Apr 2021 16:55:39,655 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
19 Apr 2021 16:55:39,656 INFO : Starting task to create L2 GCT for LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35.sky.zip
19 Apr 2021 16:55:39,661 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
19 Apr 2021 16:55:39,684 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/fe3f1d67-a4f0-41cf-99b4-6dc3c01cd7cd/status
19 Apr 2021 16:55:59,710 INFO : Cromwell job status: Running
19 Apr 2021 16:56:59,774 INFO : Cromwell job status: Succeeded
19 Apr 2021 16:56:59,774 INFO : Cromwell job completed successfully
19 Apr 2021 16:56:59,775 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
19 Apr 2021 17:17:49,543 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
19 Apr 2021 17:17:49,544 INFO : Running LINCS PSP pipeline for LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35
19 Apr 2021 17:17:49,544 INFO : Resubmitting job for runId: 80160, name: LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35
19 Apr 2021 17:17:49,544 INFO : Old job details: 
19 Apr 2021 17:17:49,545 INFO : Id: 283
19 Apr 2021 17:17:49,545 INFO : Pipeline job Id: 80924
19 Apr 2021 17:17:49,545 INFO : Run Id: 80160
19 Apr 2021 17:17:49,545 INFO : PSP Job Id: 5e0257e05beec6001388df1f
19 Apr 2021 17:17:49,545 INFO : PSP Job name: LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35_2
19 Apr 2021 17:17:49,545 INFO : PSP Job status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 17:17:49,545 INFO : JSON: {"level 4":{"s3":{"url":"s3://proteomics.clue.io/psp/level4/LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35_2_LVL4.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35_LVL4.gct"}},"assay":"P100","created":"2019-12-24T18:24:32.260Z","name":"LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35_2","id":"5e0257e05beec6001388df1f","last_modified":"2019-12-24T18:28:32.660Z","config":{"s3":{"url":"s3://proteomics.clue.io/psp/config/LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35_2.cfg"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35.cfg"}},"level 2":{"s3":{"url":"s3://proteomics.clue.io/psp/level2/LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35_2_LVL2.gct"},"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/P100/runGCTReportApi.view?runId=80160&remote=true&reportName=GCT%20File%20P100"}},"status":"POUR : succeeded in uploading all GCTs to Panorama","level 3":{"s3":{"url":"s3://proteomics.clue.io/psp/level3/LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35_2_LVL3.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35_LVL3.gct"}}}
19 Apr 2021 17:17:49,545 INFO : Resubmitting...
19 Apr 2021 17:17:49,546 INFO : Looking for existing job with name LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35
19 Apr 2021 17:17:49,682 INFO : Job with name LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35exists.
19 Apr 2021 17:17:49,682 INFO : Looking for existing job with name LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35_2
19 Apr 2021 17:17:49,816 INFO : Job with name LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35_2exists.
19 Apr 2021 17:17:49,816 INFO : Looking for existing job with name LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35_3
19 Apr 2021 17:17:49,960 INFO : PSP job name: LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35_3
19 Apr 2021 17:17:49,963 INFO : Sending JSON:
19 Apr 2021 17:17:49,963 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35_3",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35_LVL3.gct"
  }}
}
19 Apr 2021 17:17:49,963 INFO : Sending POST request to https://api.clue.io/api/psp
19 Apr 2021 17:17:50,179 INFO : Response code - 200
19 Apr 2021 17:17:50,179 INFO : Response from server: {"name":"LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35_3","assay":"P100","status":"Waiting_To_Download","id":"607e1dae77d01b0017d79127","created":"2021-04-20T00:17:50.043Z","last_modified":"2021-04-20T00:17:50.043Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_PRM_PlateAD1_annotated_minimized_2019-12-20_18-30-35.cfg"}}}
19 Apr 2021 17:17:50,179 INFO : Sent POST request to https://api.clue.io/api/psp
19 Apr 2021 17:17:50,181 INFO : Checking status of job 607e1dae77d01b0017d79127
19 Apr 2021 17:17:50,318 INFO : Status: Waiting_To_Download
19 Apr 2021 17:18:10,329 INFO : Checking status of job 607e1dae77d01b0017d79127
19 Apr 2021 17:18:10,615 INFO : Status: created LVL 3 GCT
19 Apr 2021 17:18:30,617 INFO : Checking status of job 607e1dae77d01b0017d79127
19 Apr 2021 17:18:30,901 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 17:18:30,901 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 17:18:30,902 INFO : Finished running LINCS PSP pipeline.
19 Apr 2021 17:18:30,902 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'