• Sign In
  1. Pipeline Jobs

Re-running LINCS pipeline for: LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03

P100

Job Status

Created: 2021-04-19 16:49:26
Modified: 2021-04-19 17:04:25
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Re-running LINCS pipeline for: LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03
File Path: /data/labkey/files/LINCS/P100/@files/LincsPSP_rerun_LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03_2021-04-19_16-49-25.log
Files: LincsPSP_rerun_LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03_2021-04-19_16-49-25.log
Show Grid Browse Files

Log File


19 Apr 2021 16:49:26,224 INFO : Re-running LINCS pipeline for:  LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03
19 Apr 2021 16:49:26,225 INFO : =======================================
19 Apr 2021 16:49:47,464 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
19 Apr 2021 16:49:47,464 INFO : Starting task to create L2 GCT for LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03.sky.zip
19 Apr 2021 16:49:47,474 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
19 Apr 2021 16:49:47,511 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/debeaf14-7b1a-41b9-842b-da5113e7ace1/status
19 Apr 2021 16:50:07,530 INFO : Cromwell job status: Running
19 Apr 2021 16:51:07,595 INFO : Cromwell job status: Succeeded
19 Apr 2021 16:51:07,595 INFO : Cromwell job completed successfully
19 Apr 2021 16:51:07,597 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
19 Apr 2021 16:59:20,069 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
19 Apr 2021 16:59:20,070 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03
19 Apr 2021 16:59:20,070 INFO : Resubmitting job for runId: 89962, name: LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03
19 Apr 2021 16:59:20,070 INFO : Old job details: 
19 Apr 2021 16:59:20,070 INFO : Id: 314
19 Apr 2021 16:59:20,071 INFO : Pipeline job Id: 89608
19 Apr 2021 16:59:20,071 INFO : Run Id: 89962
19 Apr 2021 16:59:20,071 INFO : PSP Job Id: 5efa693df247240017110e8e
19 Apr 2021 16:59:20,071 INFO : PSP Job name: LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03
19 Apr 2021 16:59:20,071 INFO : PSP Job status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 16:59:20,071 INFO : JSON: {"level 4":{"s3":{"url":"s3://proteomics.clue.io/psp/level4/LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03_LVL4.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03_LVL4.gct"}},"assay":"P100","created":"2020-06-29T22:20:45.658Z","name":"LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03","id":"5efa693df247240017110e8e","last_modified":"2020-06-29T22:48:12.423Z","config":{"s3":{"url":"s3://proteomics.clue.io/psp/config/LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03.cfg"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03.cfg"}},"level 2":{"s3":{"url":"s3://proteomics.clue.io/psp/level2/LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03_LVL2.gct"},"panorama":{"method":"GET","url":"https://panoramaweb.org/LINCS/P100/lincs-runGCTReportApi.view?runId=89962&remote=true&reportName=GCT%20File%20P100"}},"status":"POUR : succeeded in uploading all GCTs to Panorama","level 3":{"s3":{"url":"s3://proteomics.clue.io/psp/level3/LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03_LVL3.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03_LVL3.gct"}}}
19 Apr 2021 16:59:20,071 INFO : Resubmitting...
19 Apr 2021 16:59:20,072 INFO : Looking for existing job with name LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03
19 Apr 2021 16:59:20,584 INFO : Job with name LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03exists.
19 Apr 2021 16:59:20,584 INFO : Looking for existing job with name LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03_2
19 Apr 2021 16:59:20,719 INFO : PSP job name: LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03_2
19 Apr 2021 16:59:20,720 INFO : Sending JSON:
19 Apr 2021 16:59:20,720 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03_2",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03_LVL3.gct"
  }}
}
19 Apr 2021 16:59:20,722 INFO : Sending POST request to https://api.clue.io/api/psp
19 Apr 2021 16:59:20,926 INFO : Response code - 200
19 Apr 2021 16:59:20,926 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03_2","assay":"P100","status":"Waiting_To_Download","id":"607e1958e1c96f0017d8b828","created":"2021-04-19T23:59:20.800Z","last_modified":"2021-04-19T23:59:20.800Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/P100/%40files/GCT/LINCS_P100_DIA_Plate97_annotated_minimized_2020-06-29_18-13-03.cfg"}}}
19 Apr 2021 16:59:20,927 INFO : Sent POST request to https://api.clue.io/api/psp
19 Apr 2021 16:59:20,929 INFO : Checking status of job 607e1958e1c96f0017d8b828
19 Apr 2021 16:59:21,064 INFO : Status: Waiting_To_Download
19 Apr 2021 16:59:41,066 INFO : Checking status of job 607e1958e1c96f0017d8b828
19 Apr 2021 16:59:41,358 INFO : Status: created LVL2 GCT
19 Apr 2021 17:00:01,361 INFO : Checking status of job 607e1958e1c96f0017d8b828
19 Apr 2021 17:00:01,684 INFO : Status: created LVL2 GCT
19 Apr 2021 17:00:21,686 INFO : Checking status of job 607e1958e1c96f0017d8b828
19 Apr 2021 17:00:21,972 INFO : Status: created LVL2 GCT
19 Apr 2021 17:00:41,975 INFO : Checking status of job 607e1958e1c96f0017d8b828
19 Apr 2021 17:00:42,345 INFO : Status: created LVL2 GCT
19 Apr 2021 17:01:02,347 INFO : Checking status of job 607e1958e1c96f0017d8b828
19 Apr 2021 17:01:02,638 INFO : Status: created LVL2 GCT
19 Apr 2021 17:01:22,640 INFO : Checking status of job 607e1958e1c96f0017d8b828
19 Apr 2021 17:01:22,931 INFO : Status: created LVL2 GCT
19 Apr 2021 17:01:42,934 INFO : Checking status of job 607e1958e1c96f0017d8b828
19 Apr 2021 17:01:43,228 INFO : Status: created LVL2 GCT
19 Apr 2021 17:02:03,230 INFO : Checking status of job 607e1958e1c96f0017d8b828
19 Apr 2021 17:02:03,609 INFO : Status: created LVL2 GCT
19 Apr 2021 17:02:23,610 INFO : Checking status of job 607e1958e1c96f0017d8b828
19 Apr 2021 17:02:23,901 INFO : Status: created LVL2 GCT
19 Apr 2021 17:02:43,903 INFO : Checking status of job 607e1958e1c96f0017d8b828
19 Apr 2021 17:02:44,190 INFO : Status: created LVL2 GCT
19 Apr 2021 17:03:04,195 INFO : Checking status of job 607e1958e1c96f0017d8b828
19 Apr 2021 17:03:04,486 INFO : Status: created LVL2 GCT
19 Apr 2021 17:03:24,488 INFO : Checking status of job 607e1958e1c96f0017d8b828
19 Apr 2021 17:03:24,853 INFO : Status: created LVL2 GCT
19 Apr 2021 17:03:44,855 INFO : Checking status of job 607e1958e1c96f0017d8b828
19 Apr 2021 17:03:45,150 INFO : Status: created LVL2 GCT
19 Apr 2021 17:04:05,152 INFO : Checking status of job 607e1958e1c96f0017d8b828
19 Apr 2021 17:04:05,433 INFO : Status: created LVL 3 GCT
19 Apr 2021 17:04:25,434 INFO : Checking status of job 607e1958e1c96f0017d8b828
19 Apr 2021 17:04:25,724 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 17:04:25,724 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 17:04:25,724 INFO : Finished running LINCS PSP pipeline.
19 Apr 2021 17:04:25,724 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'