Re-running LINCS pipeline on PSP for: LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23

GCP

Job Status

Created: 2020-04-03 15:00:11
Modified: 2020-06-01 16:36:20
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Re-running LINCS pipeline on PSP for: LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23
File Path: /data/labkey/files/LINCS/GCP/@files/LincsPSP_rerun_LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23_2020-04-03_15-00-10.log
Files: LincsPSP_rerun_LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23_2020-04-03_15-00-10.log

Log File


03 Apr 2020 15:00:11,278 INFO : Re-running LINCS pipeline on PSP for: LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23
03 Apr 2020 15:00:11,278 INFO : =======================================
03 Apr 2020 15:00:11,544 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
03 Apr 2020 15:00:11,544 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23
03 Apr 2020 15:00:11,544 INFO : Resubmitting job for runId: 85319, name: LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23
03 Apr 2020 15:00:11,544 INFO : Old job details:
03 Apr 2020 15:00:11,544 INFO : Id: 303
03 Apr 2020 15:00:11,544 INFO : Pipeline job Id: 85541
03 Apr 2020 15:00:11,544 INFO : Run Id: 85319
03 Apr 2020 15:00:11,544 INFO : PSP Job Id: 5e87a3e594eb970011cc0137
03 Apr 2020 15:00:11,544 INFO : PSP Job name: LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23_2
03 Apr 2020 15:00:11,544 INFO : PSP Job status: Waiting_To_Download
03 Apr 2020 15:00:11,544 INFO : JSON: {"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23_LVL4.gct"}},"assay":"GCP","created":"2020-04-03T21:00:21.426Z","name":"LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23_2","id":"5e87a3e594eb970011cc0137","last_modified":"2020-04-03T21:00:21.426Z","config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23.cfg"}},"level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=85319&remote=true&reportName=GCT%20File%20GCP"}},"status":"Waiting_To_Download","level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23_LVL3.gct"}}}
03 Apr 2020 15:00:11,544 INFO : Resubmitting...
03 Apr 2020 15:00:11,546 INFO : Looking for existing job with name LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23
03 Apr 2020 15:00:11,904 INFO : Job with name LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23exists.
03 Apr 2020 15:00:11,904 INFO : Looking for existing job with name LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23_2
03 Apr 2020 15:00:12,032 INFO : Job with name LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23_2exists.
03 Apr 2020 15:00:12,032 INFO : Looking for existing job with name LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23_3
03 Apr 2020 15:00:12,156 INFO : PSP job name: LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23_3
03 Apr 2020 15:00:12,157 INFO : Sending JSON:
03 Apr 2020 15:00:12,157 INFO : { "level 4": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23_LVL4.gct" }}, "assay": "GCP", "name": "LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23_3", "config": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23.cfg" }}, "level 2": {"panorama": { "method": "GET", "url": "https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=85319&remote=true&reportName=GCT%20File%20GCP" }}, "level 3": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23_LVL3.gct" }} }
03 Apr 2020 15:00:12,157 INFO : Sending POST request to https://api.clue.io/api/psp
03 Apr 2020 15:00:12,386 INFO : Response code - 200
03 Apr 2020 15:00:12,386 INFO : Response from server: {"name":"LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23_3","assay":"GCP","status":"Waiting_To_Download","id":"5e87b1ecc6865400115e1c86","created":"2020-04-03T22:00:12.228Z","last_modified":"2020-04-03T22:00:12.228Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=85319&remote=true&reportName=GCT%20File%20GCP"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23.cfg"}}}
03 Apr 2020 15:00:12,386 INFO : Sent POST request to https://api.clue.io/api/psp
03 Apr 2020 15:00:12,388 INFO : Checking status of job 5e87b1ecc6865400115e1c86
03 Apr 2020 15:00:12,511 INFO : Status: Waiting_To_Download
03 Apr 2020 15:00:32,511 INFO : Checking status of job 5e87b1ecc6865400115e1c86
03 Apr 2020 15:00:32,783 INFO : Status: created LVL2 GCT
03 Apr 2020 15:00:52,783 INFO : Checking status of job 5e87b1ecc6865400115e1c86
03 Apr 2020 15:00:53,064 INFO : Status: created LVL2 GCT
03 Apr 2020 15:01:13,064 INFO : Checking status of job 5e87b1ecc6865400115e1c86
03 Apr 2020 15:01:13,339 INFO : Status: created LVL2 GCT
03 Apr 2020 15:01:33,339 INFO : Checking status of job 5e87b1ecc6865400115e1c86
03 Apr 2020 15:01:33,689 INFO : Status: created LVL2 GCT
03 Apr 2020 15:01:53,689 INFO : Checking status of job 5e87b1ecc6865400115e1c86
03 Apr 2020 15:01:53,964 INFO : Status: created LVL2 GCT
03 Apr 2020 15:02:13,965 INFO : Checking status of job 5e87b1ecc6865400115e1c86
03 Apr 2020 15:02:14,243 INFO : Status: created LVL2 GCT
03 Apr 2020 15:02:34,244 INFO : Checking status of job 5e87b1ecc6865400115e1c86
03 Apr 2020 15:02:34,519 INFO : Status: created LVL2 GCT
03 Apr 2020 15:02:54,519 INFO : Checking status of job 5e87b1ecc6865400115e1c86
03 Apr 2020 15:02:54,789 INFO : Status: created LVL2 GCT
03 Apr 2020 15:03:14,789 INFO : Checking status of job 5e87b1ecc6865400115e1c86
03 Apr 2020 15:03:15,059 INFO : Status: created LVL2 GCT
03 Apr 2020 15:03:35,059 INFO : Checking status of job 5e87b1ecc6865400115e1c86
03 Apr 2020 15:03:35,327 INFO : Status: created LVL 3 GCT
03 Apr 2020 15:03:55,327 INFO : Checking status of job 5e87b1ecc6865400115e1c86
03 Apr 2020 15:03:55,600 INFO : Status: created LVL 4 GCT
03 Apr 2020 15:04:15,600 INFO : Checking status of job 5e87b1ecc6865400115e1c86
03 Apr 2020 15:04:15,949 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
03 Apr 2020 15:04:15,949 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
03 Apr 2020 15:04:15,949 INFO : Finished running LINCS PSP pipeline.
03 Apr 2020 15:04:15,949 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'