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Re-running LINCS pipeline on PSP for: LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23

GCP

Job Status

Created: 2020-04-03 14:00:20
Modified: 2020-06-01 16:36:20
Email: vsharma@uw.edu
Status: ERROR
Info:
Description: Re-running LINCS pipeline on PSP for: LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23
File Path: /data/labkey/files/LINCS/GCP/@files/LincsPSP_rerun_LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23_2020-04-03_14-00-19.log
Files: LincsPSP_rerun_LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23_2020-04-03_14-00-19.log
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Log File


03 Apr 2020 14:00:20,281 INFO : Re-running LINCS pipeline on PSP for:  LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23
03 Apr 2020 14:00:20,281 INFO : =======================================
03 Apr 2020 14:00:20,869 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
03 Apr 2020 14:00:20,869 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23
03 Apr 2020 14:00:20,869 INFO : Resubmitting job for runId: 85319, name: LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23
03 Apr 2020 14:00:20,869 INFO : Old job details: 
03 Apr 2020 14:00:20,869 INFO : Id: 302
03 Apr 2020 14:00:20,869 INFO : Pipeline job Id: 85539
03 Apr 2020 14:00:20,869 INFO : Run Id: 85319
03 Apr 2020 14:00:20,869 INFO : PSP Job Id: 5e879adfc6865400115e1c81
03 Apr 2020 14:00:20,869 INFO : PSP Job name: LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23
03 Apr 2020 14:00:20,869 INFO : PSP Job status: Waiting_To_Download
03 Apr 2020 14:00:20,869 INFO : JSON: {"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23_LVL4.gct"}},"assay":"GCP","created":"2020-04-03T20:21:51.652Z","name":"LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23","id":"5e879adfc6865400115e1c81","last_modified":"2020-04-03T20:21:51.652Z","config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23.cfg"}},"level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=85319&remote=true&reportName=GCT%20File%20GCP"}},"status":"Waiting_To_Download","level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23_LVL3.gct"}}}
03 Apr 2020 14:00:20,869 INFO : Resubmitting...
03 Apr 2020 14:00:20,871 INFO : Looking for existing job with name LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23
03 Apr 2020 14:00:21,227 INFO : Job with name LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23exists.
03 Apr 2020 14:00:21,228 INFO : Looking for existing job with name LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23_2
03 Apr 2020 14:00:21,353 INFO : PSP job name: LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23_2
03 Apr 2020 14:00:21,354 INFO : Sending JSON:
03 Apr 2020 14:00:21,354 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23_LVL4.gct"
  }},
  "assay": "GCP",
  "name": "LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23_2",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=85319&remote=true&reportName=GCT%20File%20GCP"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23_LVL3.gct"
  }}
}
03 Apr 2020 14:00:21,354 INFO : Sending POST request to https://api.clue.io/api/psp
03 Apr 2020 14:00:21,623 INFO : Response code - 200
03 Apr 2020 14:00:21,623 INFO : Response from server: {"name":"LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23_2","assay":"GCP","status":"Waiting_To_Download","id":"5e87a3e594eb970011cc0137","created":"2020-04-03T21:00:21.426Z","last_modified":"2020-04-03T21:00:21.426Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=85319&remote=true&reportName=GCT%20File%20GCP"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23.cfg"}}}
03 Apr 2020 14:00:21,623 INFO : Sent POST request to https://api.clue.io/api/psp
03 Apr 2020 14:00:21,625 INFO : Checking status of job 5e87a3e594eb970011cc0137
03 Apr 2020 14:00:21,751 INFO : Status: Waiting_To_Download
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03 Apr 2020 14:31:08,425 ERROR: Exceeded 30 minute wait time.
03 Apr 2020 14:31:08,512 INFO : Finished running LINCS PSP pipeline.
03 Apr 2020 14:31:08,512 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'