Running LINCS pipeline on PSP for: LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23

GCP

Job Status

Created: 2020-04-03 13:21:50
Modified: 2020-06-01 16:36:20
Email: jmulla@broadinstitute.org
Status: ERROR
Info:
Description: Running LINCS pipeline on PSP for: LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23
File Path: /data/labkey/files/LINCS/GCP/@files/LincsPSP_LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23_2020-04-03_13-21-50.log
Files: LincsPSP_LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23_2020-04-03_13-21-50.log

Log File


03 Apr 2020 13:21:50,388 INFO : Running LINCS pipeline on PSP for: LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23
03 Apr 2020 13:21:50,388 INFO : =======================================
03 Apr 2020 13:21:51,207 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
03 Apr 2020 13:21:51,207 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23
03 Apr 2020 13:21:51,207 INFO : Submitting job for runId: 85319, name: LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23
03 Apr 2020 13:21:51,210 INFO : Looking for existing job with name LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23
03 Apr 2020 13:21:51,580 INFO : PSP job name: LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23
03 Apr 2020 13:21:51,581 INFO : Sending JSON:
03 Apr 2020 13:21:51,581 INFO : { "level 4": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23_LVL4.gct" }}, "assay": "GCP", "name": "LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23", "config": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23.cfg" }}, "level 2": {"panorama": { "method": "GET", "url": "https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=85319&remote=true&reportName=GCT%20File%20GCP" }}, "level 3": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23_LVL3.gct" }} }
03 Apr 2020 13:21:51,581 INFO : Sending POST request to https://api.clue.io/api/psp
03 Apr 2020 13:21:51,792 INFO : Response code - 200
03 Apr 2020 13:21:51,792 INFO : Response from server: {"name":"LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23","assay":"GCP","status":"Waiting_To_Download","id":"5e879adfc6865400115e1c81","created":"2020-04-03T20:21:51.652Z","last_modified":"2020-04-03T20:21:51.652Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=85319&remote=true&reportName=GCT%20File%20GCP"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23.cfg"}}}
03 Apr 2020 13:21:51,793 INFO : Sent POST request to https://api.clue.io/api/psp
03 Apr 2020 13:21:51,795 INFO : Checking status of job 5e879adfc6865400115e1c81
03 Apr 2020 13:21:51,919 INFO : Status: Waiting_To_Download
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03 Apr 2020 13:52:38,444 ERROR: Exceeded 30 minute wait time.
03 Apr 2020 13:52:38,552 INFO : Finished running LINCS PSP pipeline.
03 Apr 2020 13:52:38,552 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'