Skyline document import - LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23.sky.zip

GCP

Job Status

Created: 2020-04-03 13:19:56
Modified: 2020-06-01 16:36:20
Email: jmulla@broadinstitute.org
Status: COMPLETE
Info:
Description: Skyline document import - LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23.sky.zip
File Path: /data/labkey/files/LINCS/GCP/@files/LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23.sky_2020-04-03_13-19-56.log
Files: LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23.sky_2020-04-03_13-19-56.log
Completed Runs: LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23.sky.zip

Log File


03 Apr 2020 13:19:57,083 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'
03 Apr 2020 13:19:58,467 INFO : Created temp file because input is from cloud: s3://s3.amazonaws.com/mc-panoramaweb/container836/LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23.sky.zip
03 Apr 2020 13:19:58,468 INFO : Starting to import Skyline document from LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23.sky.zip
03 Apr 2020 13:19:58,469 INFO : Expanding Histone2016.blib
03 Apr 2020 13:19:58,470 INFO : Expanding Histone2016.redundant.blib
03 Apr 2020 13:19:58,472 INFO : Expanding LINCS_GCP_Plate94_annotated_minimized.skyd
03 Apr 2020 13:19:58,863 INFO : Expanding LINCS_GCP_Plate94_annotated_minimized.sky.view
03 Apr 2020 13:19:58,863 INFO : Expanding LINCS_GCP_Plate94_annotated_minimized.sky
03 Apr 2020 13:19:58,994 WARN : The version of this Skyline document is 20.11. This is newer than the highest supported version 4.1
03 Apr 2020 13:19:59,007 INFO : 1% Done
03 Apr 2020 13:20:03,060 INFO : Inserting H3K4me0 - BI10003
03 Apr 2020 13:20:03,090 INFO : 2% Done
03 Apr 2020 13:20:03,892 INFO : Inserting H3K4me1 - BI10004
03 Apr 2020 13:20:04,682 INFO : Inserting H3K4me2 - BI10005
03 Apr 2020 13:20:04,712 INFO : 3% Done
03 Apr 2020 13:20:05,926 INFO : Inserting H3K4me3 - BI10006
03 Apr 2020 13:20:05,968 INFO : 5% Done
03 Apr 2020 13:20:07,754 INFO : Inserting H3K4ac1 - BI10007
03 Apr 2020 13:20:07,774 INFO : 6% Done
03 Apr 2020 13:20:08,561 INFO : Inserting H3K9me0K14ac0 - BI10008
03 Apr 2020 13:20:09,489 INFO : Inserting H3K9me1K14ac0 - BI10009
03 Apr 2020 13:20:09,512 INFO : 7% Done
03 Apr 2020 13:20:10,426 INFO : Inserting H3K9me2K14ac0 - BI10010
03 Apr 2020 13:20:10,450 INFO : 8% Done
03 Apr 2020 13:20:11,364 INFO : Inserting H3K9me3K14ac0 - BI10011
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03 Apr 2020 13:20:14,651 INFO : 11% Done
03 Apr 2020 13:20:15,572 INFO : Inserting H3K9me2K14ac1 - BI10015
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03 Apr 2020 13:20:18,458 INFO : Inserting H3K9me0S10ph1K14ac0 - BI10018
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03 Apr 2020 13:20:23,078 INFO : Inserting H3K9me0S10ph1K14ac1 - BI10023
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03 Apr 2020 13:20:28,944 INFO : 23% Done
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03 Apr 2020 13:20:32,356 INFO : Inserting H3K27me0K36me0 - BI10034
03 Apr 2020 13:20:33,598 INFO : Inserting H3K27me0K36me1 - BI10085
03 Apr 2020 13:20:33,623 INFO : 27% Done
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03 Apr 2020 13:20:36,627 INFO : Inserting H3K27me1K36me0 - BI10035
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03 Apr 2020 13:20:38,041 INFO : 31% Done
03 Apr 2020 13:20:38,926 INFO : Inserting H3K27me1K36me2 - BI10037
03 Apr 2020 13:20:39,523 INFO : Inserting H3K27me1K36me3 - BI10038
03 Apr 2020 13:20:39,538 INFO : 32% Done
03 Apr 2020 13:20:40,273 INFO : Inserting H3K27me2K36me0 - BI10039
03 Apr 2020 13:20:40,283 INFO : 33% Done
03 Apr 2020 13:20:40,988 INFO : Inserting H3K27me2K36me1 - BI10040
03 Apr 2020 13:20:41,006 INFO : 34% Done
03 Apr 2020 13:20:41,738 INFO : Inserting H3K27me2K36me2 - BI10041
03 Apr 2020 13:20:42,987 INFO : Inserting H3K27me2K36me3 - BI10042
03 Apr 2020 13:20:43,021 INFO : 36% Done
03 Apr 2020 13:20:44,748 INFO : Inserting H3K27me3K36me0 - BI10043
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03 Apr 2020 13:20:47,571 INFO : Inserting H3K27me3K36me3 - BI10046
03 Apr 2020 13:20:47,600 INFO : 40% Done
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03 Apr 2020 13:20:52,305 INFO : 43% Done
03 Apr 2020 13:20:53,207 INFO : Inserting H3.3K27me0K36me0 - BI10051
03 Apr 2020 13:20:53,224 INFO : 44% Done
03 Apr 2020 13:20:53,961 INFO : Inserting H3NORM(41-49) - BI10052
03 Apr 2020 13:20:53,986 INFO : 45% Done
03 Apr 2020 13:20:55,163 INFO : Inserting H3NORM(41-49) - BI10052p
03 Apr 2020 13:20:55,180 INFO : 46% Done
03 Apr 2020 13:20:55,910 INFO : Inserting H3K56me0 - BI10054
03 Apr 2020 13:20:56,821 INFO : Inserting H3K56me1 - BI10055
03 Apr 2020 13:20:56,840 INFO : 47% Done
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03 Apr 2020 13:20:58,625 INFO : Inserting H3K56ac1-BI10058
03 Apr 2020 13:20:58,662 INFO : 50% Done
03 Apr 2020 13:21:00,596 INFO : Inserting H3K79me0 - BI10060
03 Apr 2020 13:21:01,668 INFO : Inserting H3K79me1 - BI10061
03 Apr 2020 13:21:01,691 INFO : 51% Done
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03 Apr 2020 13:21:02,739 INFO : 52% Done
03 Apr 2020 13:21:03,619 INFO : Inserting H4(4to17)ac0me0 - BI10088
03 Apr 2020 13:21:03,656 INFO : 54% Done
03 Apr 2020 13:21:05,560 INFO : Inserting H4(4to17)K5ac1me0_leftpeak - BI10089
03 Apr 2020 13:21:05,585 INFO : 55% Done
03 Apr 2020 13:21:06,760 INFO : Inserting H4(4to17)K12ac1_left peak - BI10091
03 Apr 2020 13:21:06,790 INFO : 57% Done
03 Apr 2020 13:21:08,270 INFO : Inserting H4(4to17)K16ac1me0 - BI10092
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03 Apr 2020 13:21:09,186 INFO : Inserting H4(4to17)K16ac0me1 - BI10102
03 Apr 2020 13:21:09,233 INFO : 60% Done
03 Apr 2020 13:21:11,685 INFO : Inserting H4(4to17)K5ac1K8ac1me0_left peak - BI10094
03 Apr 2020 13:21:11,711 INFO : 61% Done
03 Apr 2020 13:21:12,900 INFO : Inserting H4(4to17)K5ac1K16ac1me0_right peak - BI10095
03 Apr 2020 13:21:12,924 INFO : 62% Done
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03 Apr 2020 13:21:13,990 INFO : 63% Done
03 Apr 2020 13:21:15,172 INFO : Inserting H4(4to17)K12ac1K16ac1me0 - BI10097
03 Apr 2020 13:21:15,207 INFO : 64% Done
03 Apr 2020 13:21:16,692 INFO : Inserting H4(4to17)K8ac1K12ac1K16ac1me0_right peak - BI10098
03 Apr 2020 13:21:16,718 INFO : 66% Done
03 Apr 2020 13:21:17,879 INFO : Inserting H4(4to17)K5ac1K8ac1K12ac1me0_left peak - BI10099
03 Apr 2020 13:21:17,933 INFO : 68% Done
03 Apr 2020 13:21:20,435 INFO : Inserting H4(4to17)K5ac1K8ac1K16ac1me0_right peak - BI10100
03 Apr 2020 13:21:20,460 INFO : 69% Done
03 Apr 2020 13:21:21,630 INFO : Inserting H4(4to17)K5ac1K8ac1K12ac1K16ac1me0 - BI10101
03 Apr 2020 13:21:21,669 INFO : 71% Done
03 Apr 2020 13:21:23,851 INFO : Inserting H4(68-78)AltNorm - BI10108
03 Apr 2020 13:21:23,894 INFO : 73% Done
03 Apr 2020 13:21:26,089 INFO : Inserting H4(68-78)AltNorm - BI10108p
03 Apr 2020 13:21:26,107 INFO : 74% Done
03 Apr 2020 13:21:26,867 INFO : Inserting H4(20to23)K20me0 - BI10103
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03 Apr 2020 13:21:28,069 INFO : Inserting H4(20to23)K20me1 - BI10104
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03 Apr 2020 13:21:28,985 INFO : Inserting H4(20to23)K20me2 - BI10105
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03 Apr 2020 13:21:30,190 INFO : Inserting H4(20to23)K20me3 - BI10106
03 Apr 2020 13:21:30,211 INFO : 78% Done
03 Apr 2020 13:21:31,253 INFO : Inserting H2A(21to29)NORM - BI10109
03 Apr 2020 13:21:31,295 INFO : 80% Done
03 Apr 2020 13:21:32,877 INFO : Done parsing Skyline document.
03 Apr 2020 13:21:32,909 INFO : No group comparisons found.
03 Apr 2020 13:21:32,909 INFO : Calculating calibration curves
03 Apr 2020 13:21:33,356 INFO : 81% Done
03 Apr 2020 13:21:33,922 INFO : 82% Done
03 Apr 2020 13:21:34,715 INFO : 83% Done
03 Apr 2020 13:21:35,519 INFO : 84% Done
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03 Apr 2020 13:21:40,150 INFO : 93% Done
03 Apr 2020 13:21:40,534 INFO : 94% Done
03 Apr 2020 13:21:41,045 INFO : 95% Done
03 Apr 2020 13:21:41,539 INFO : 96% Done
03 Apr 2020 13:21:41,984 INFO : 97% Done
03 Apr 2020 13:21:42,494 INFO : 98% Done
03 Apr 2020 13:21:42,793 INFO : Done calculating calibration curves.
03 Apr 2020 13:21:45,314 INFO : Copied LINCS_GCP_Plate94_annotated_minimized.skyd to cloud storage.
03 Apr 2020 13:21:45,462 INFO : Copied Histone2016.blib to cloud storage.
03 Apr 2020 13:21:45,718 INFO : Copied Histone2016.redundant.blib to cloud storage.
03 Apr 2020 13:21:50,274 INFO : Completed import of Skyline document from LINCS_GCP_Plate94_annotated_minimized_2020-04-03_16-19-23.sky.zip
03 Apr 2020 13:21:50,281 INFO : 100% Done
03 Apr 2020 13:21:50,605 INFO : LINCS: Queued job Id 85539 for submitting POST request to PSP.
03 Apr 2020 13:21:50,825 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'