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Running LINCS pipeline on PSP for: LINCS_GCP_Plate95_annotated_minimized_2020-04-03_11-33-00

GCP

Job Status

Created: 2020-04-03 08:36:20
Modified: 2020-06-01 16:36:20
Email: jmulla@broadinstitute.org
Status: ERROR
Info:
Description: Running LINCS pipeline on PSP for: LINCS_GCP_Plate95_annotated_minimized_2020-04-03_11-33-00
File Path: /data/labkey/files/LINCS/GCP/@files/LincsPSP_LINCS_GCP_Plate95_annotated_minimized_2020-04-03_11-33-00_2020-04-03_08-36-20.log
Files: LincsPSP_LINCS_GCP_Plate95_annotated_minimized_2020-04-03_11-33-00_2020-04-03_08-36-20.log
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Log File


03 Apr 2020 08:36:20,759 INFO : Running LINCS pipeline on PSP for:  LINCS_GCP_Plate95_annotated_minimized_2020-04-03_11-33-00
03 Apr 2020 08:36:20,759 INFO : =======================================
03 Apr 2020 08:36:21,499 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
03 Apr 2020 08:36:21,500 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate95_annotated_minimized_2020-04-03_11-33-00
03 Apr 2020 08:36:21,500 INFO : Submitting job for runId: 85312, name: LINCS_GCP_Plate95_annotated_minimized_2020-04-03_11-33-00
03 Apr 2020 08:36:21,502 INFO : Looking for existing job with name LINCS_GCP_Plate95_annotated_minimized_2020-04-03_11-33-00
03 Apr 2020 08:36:21,923 INFO : PSP job name: LINCS_GCP_Plate95_annotated_minimized_2020-04-03_11-33-00
03 Apr 2020 08:36:21,924 INFO : Sending JSON:
03 Apr 2020 08:36:21,924 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate95_annotated_minimized_2020-04-03_11-33-00_LVL4.gct"
  }},
  "assay": "GCP",
  "name": "LINCS_GCP_Plate95_annotated_minimized_2020-04-03_11-33-00",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate95_annotated_minimized_2020-04-03_11-33-00.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=85312&remote=true&reportName=GCT%20File%20GCP"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate95_annotated_minimized_2020-04-03_11-33-00_LVL3.gct"
  }}
}
03 Apr 2020 08:36:21,925 INFO : Sending POST request to https://api.clue.io/api/psp
03 Apr 2020 08:36:22,152 INFO : Response code - 200
03 Apr 2020 08:36:22,153 INFO : Response from server: {"name":"LINCS_GCP_Plate95_annotated_minimized_2020-04-03_11-33-00","assay":"GCP","status":"Waiting_To_Download","id":"5e8757f594eb970011cc001b","created":"2020-04-03T15:36:21.995Z","last_modified":"2020-04-03T15:36:21.995Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=85312&remote=true&reportName=GCT%20File%20GCP"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate95_annotated_minimized_2020-04-03_11-33-00_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate95_annotated_minimized_2020-04-03_11-33-00_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate95_annotated_minimized_2020-04-03_11-33-00.cfg"}}}
03 Apr 2020 08:36:22,154 INFO : Sent POST request to https://api.clue.io/api/psp
03 Apr 2020 08:36:22,157 INFO : Checking status of job 5e8757f594eb970011cc001b
03 Apr 2020 08:36:22,282 INFO : Status: Waiting_To_Download
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03 Apr 2020 09:07:09,022 ERROR: Exceeded 30 minute wait time.
03 Apr 2020 09:07:09,059 INFO : Finished running LINCS PSP pipeline.
03 Apr 2020 09:07:09,060 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'