Re-running LINCS pipeline on PSP for: LINCS_GCP_SKYLINE_Plate94_annotated_minimized_2020-04-01

Re-running LINCS pipeline on PSP for: LINCS_GCP_SKYLINE_Plate94_annotated_minimized_2020-04-01_18-03-48

GCP

Job Status

Created:

2020-04-01 18:15:18

Modified:

2020-06-01 16:36:20

Email:

vsharma@uw.edu

Status:

COMPLETE

Info:

Description:

Re-running LINCS pipeline on PSP for: LINCS_GCP_SKYLINE_Plate94_annotated_minimized_2020-04-01_18-03-48

File Path:

/data/labkey/files/LINCS/GCP/@files/LincsPSP_rerun_LINCS_GCP_SKYLINE_Plate94_annotated_minimized_2020-04-01_18-03-48_2020-04-01_18-15-17.log

Files:

LincsPSP_rerun_LINCS_GCP_SKYLINE_Plate94_annotated_minimized_2020-04-01_18-03-48_2020-04-01_18-15-17.log

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01 Apr 2020 18:15:18,475 INFO : Re-running LINCS pipeline on PSP for:  LINCS_GCP_SKYLINE_Plate94_annotated_minimized_2020-04-01_18-03-48

01 Apr 2020 18:15:18,475 INFO : =======================================

01 Apr 2020 18:15:18,846 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'

01 Apr 2020 18:15:18,847 INFO : Running LINCS PSP pipeline for LINCS_GCP_SKYLINE_Plate94_annotated_minimized_2020-04-01_18-03-48

01 Apr 2020 18:15:18,847 INFO : Resubmitting job for runId: 85258, name: LINCS_GCP_SKYLINE_Plate94_annotated_minimized_2020-04-01_18-03-48

01 Apr 2020 18:15:18,847 INFO : Old job details:

01 Apr 2020 18:15:18,847 INFO : Id: 299

01 Apr 2020 18:15:18,847 INFO : Pipeline job Id: 85473

01 Apr 2020 18:15:18,847 INFO : Run Id: 85258

01 Apr 2020 18:15:18,848 INFO : PSP Job Id: 5e851075c6865400115e1a06

01 Apr 2020 18:15:18,848 INFO : PSP Job name: LINCS_GCP_SKYLINE_Plate94_annotated_minimized_2020-04-01_18-03-48

01 Apr 2020 18:15:18,848 INFO : PSP Job status: Waiting_To_Download

01 Apr 2020 18:15:18,848 INFO : JSON: {"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_SKYLINE_Plate94_annotated_minimized_2020-04-01_18-03-48_LVL4.gct"}},"assay":"GCP","created":"2020-04-01T22:06:45.862Z","name":"LINCS_GCP_SKYLINE_Plate94_annotated_minimized_2020-04-01_18-03-48","id":"5e851075c6865400115e1a06","last_modified":"2020-04-01T22:06:45.862Z","config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_SKYLINE_Plate94_annotated_minimized_2020-04-01_18-03-48.cfg"}},"level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=85258&remote=true&reportName=GCT%20File%20GCP"}},"status":"Waiting_To_Download","level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_SKYLINE_Plate94_annotated_minimized_2020-04-01_18-03-48_LVL3.gct"}}}

01 Apr 2020 18:15:18,848 INFO : Resubmitting...

01 Apr 2020 18:15:18,850 INFO : Looking for existing job with name LINCS_GCP_SKYLINE_Plate94_annotated_minimized_2020-04-01_18-03-48

01 Apr 2020 18:15:19,206 INFO : Job with name LINCS_GCP_SKYLINE_Plate94_annotated_minimized_2020-04-01_18-03-48exists.

01 Apr 2020 18:15:19,208 INFO : Looking for existing job with name LINCS_GCP_SKYLINE_Plate94_annotated_minimized_2020-04-01_18-03-48_2

01 Apr 2020 18:15:19,332 INFO : PSP job name: LINCS_GCP_SKYLINE_Plate94_annotated_minimized_2020-04-01_18-03-48_2

01 Apr 2020 18:15:19,333 INFO : Sending JSON:

01 Apr 2020 18:15:19,333 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_SKYLINE_Plate94_annotated_minimized_2020-04-01_18-03-48_LVL4.gct"
  }},
  "assay": "GCP",
  "name": "LINCS_GCP_SKYLINE_Plate94_annotated_minimized_2020-04-01_18-03-48_2",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_SKYLINE_Plate94_annotated_minimized_2020-04-01_18-03-48.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=85258&remote=true&reportName=GCT%20File%20GCP"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_SKYLINE_Plate94_annotated_minimized_2020-04-01_18-03-48_LVL3.gct"
  }}
}

01 Apr 2020 18:15:19,334 INFO : Sending POST request to https://api.clue.io/api/psp

01 Apr 2020 18:15:19,526 INFO : Response code - 200

01 Apr 2020 18:15:19,526 INFO : Response from server: {"name":"LINCS_GCP_SKYLINE_Plate94_annotated_minimized_2020-04-01_18-03-48_2","assay":"GCP","status":"Waiting_To_Download","id":"5e853ca7c6865400115e1a14","created":"2020-04-02T01:15:19.403Z","last_modified":"2020-04-02T01:15:19.403Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=85258&remote=true&reportName=GCT%20File%20GCP"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_SKYLINE_Plate94_annotated_minimized_2020-04-01_18-03-48_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_SKYLINE_Plate94_annotated_minimized_2020-04-01_18-03-48_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_SKYLINE_Plate94_annotated_minimized_2020-04-01_18-03-48.cfg"}}}

01 Apr 2020 18:15:19,527 INFO : Sent POST request to https://api.clue.io/api/psp

01 Apr 2020 18:15:19,528 INFO : Checking status of job 5e853ca7c6865400115e1a14

01 Apr 2020 18:15:19,651 INFO : Status: Waiting_To_Download

01 Apr 2020 18:15:39,651 INFO : Checking status of job 5e853ca7c6865400115e1a14

01 Apr 2020 18:15:39,928 INFO : Status: created LVL2 GCT

01 Apr 2020 18:15:59,928 INFO : Checking status of job 5e853ca7c6865400115e1a14

01 Apr 2020 18:16:00,213 INFO : Status: created LVL2 GCT

01 Apr 2020 18:16:20,214 INFO : Checking status of job 5e853ca7c6865400115e1a14

01 Apr 2020 18:16:20,486 INFO : Status: created LVL2 GCT

01 Apr 2020 18:16:40,486 INFO : Checking status of job 5e853ca7c6865400115e1a14

01 Apr 2020 18:16:40,850 INFO : Status: created LVL2 GCT

01 Apr 2020 18:17:00,851 INFO : Checking status of job 5e853ca7c6865400115e1a14

01 Apr 2020 18:17:01,126 INFO : Status: created LVL2 GCT

01 Apr 2020 18:17:21,126 INFO : Checking status of job 5e853ca7c6865400115e1a14

01 Apr 2020 18:17:21,403 INFO : Status: created LVL2 GCT

01 Apr 2020 18:17:41,403 INFO : Checking status of job 5e853ca7c6865400115e1a14

01 Apr 2020 18:17:41,677 INFO : Status: created LVL2 GCT

01 Apr 2020 18:18:01,678 INFO : Checking status of job 5e853ca7c6865400115e1a14

01 Apr 2020 18:18:02,037 INFO : Status: created LVL2 GCT

01 Apr 2020 18:18:22,037 INFO : Checking status of job 5e853ca7c6865400115e1a14

01 Apr 2020 18:18:22,313 INFO : Status: created LVL2 GCT

01 Apr 2020 18:18:42,313 INFO : Checking status of job 5e853ca7c6865400115e1a14

01 Apr 2020 18:18:42,586 INFO : Status: created LVL 3 GCT

01 Apr 2020 18:19:02,587 INFO : Checking status of job 5e853ca7c6865400115e1a14

01 Apr 2020 18:19:02,867 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama

01 Apr 2020 18:19:02,868 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama

01 Apr 2020 18:19:02,868 INFO : Finished running LINCS PSP pipeline.

01 Apr 2020 18:19:02,868 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'

PanoramaWeb

PanoramaWeb

Re-running LINCS pipeline on PSP for: LINCS_GCP_SKYLINE_Plate94_annotated_minimized_2020-04-01_18-03-48

Job Status

Log File