Running LINCS pipeline on PSP for: LINCS_GCP_Plate83_annotated_minimized_2020-01-06_13-51-32

GCP

Job Status

Created: 2020-01-06 10:53:48
Modified: 2020-06-01 16:36:20
Email: karen@broadinstitute.org
Status: ERROR
Info:
Description: Running LINCS pipeline on PSP for: LINCS_GCP_Plate83_annotated_minimized_2020-01-06_13-51-32
File Path: /data/labkey/files/LINCS/GCP/@files/LincsPSP_LINCS_GCP_Plate83_annotated_minimized_2020-01-06_13-51-32_2020-01-06_10-53-48.log
Files: LincsPSP_LINCS_GCP_Plate83_annotated_minimized_2020-01-06_13-51-32_2020-01-06_10-53-48.log

Log File


06 Jan 2020 10:53:48,393 INFO : Running LINCS pipeline on PSP for: LINCS_GCP_Plate83_annotated_minimized_2020-01-06_13-51-32
06 Jan 2020 10:53:48,393 INFO : =======================================
06 Jan 2020 10:53:49,214 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
06 Jan 2020 10:53:49,214 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate83_annotated_minimized_2020-01-06_13-51-32
06 Jan 2020 10:53:49,214 INFO : Submitting job for runId: 80575, name: LINCS_GCP_Plate83_annotated_minimized_2020-01-06_13-51-32
06 Jan 2020 10:53:49,215 INFO : Looking for existing job with name LINCS_GCP_Plate83_annotated_minimized_2020-01-06_13-51-32
06 Jan 2020 10:53:49,584 INFO : PSP job name: LINCS_GCP_Plate83_annotated_minimized_2020-01-06_13-51-32
06 Jan 2020 10:53:49,584 INFO : Sending JSON:
06 Jan 2020 10:53:49,584 INFO : { "level 4": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate83_annotated_minimized_2020-01-06_13-51-32_LVL4.gct" }}, "assay": "GCP", "name": "LINCS_GCP_Plate83_annotated_minimized_2020-01-06_13-51-32", "config": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate83_annotated_minimized_2020-01-06_13-51-32.cfg" }}, "level 2": {"panorama": { "method": "GET", "url": "https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=80575&remote=true&reportName=GCT%20File%20GCP" }}, "level 3": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate83_annotated_minimized_2020-01-06_13-51-32_LVL3.gct" }} }
06 Jan 2020 10:53:49,585 INFO : Sending POST request to https://api.clue.io/api/psp
06 Jan 2020 10:53:49,819 INFO : Response code - 200
06 Jan 2020 10:53:49,819 INFO : Response from server: {"name":"LINCS_GCP_Plate83_annotated_minimized_2020-01-06_13-51-32","assay":"GCP","status":"Waiting_To_Download","id":"5e13823d5beec6001388e35b","created":"2020-01-06T18:53:49.667Z","last_modified":"2020-01-06T18:53:49.667Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=80575&remote=true&reportName=GCT%20File%20GCP"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate83_annotated_minimized_2020-01-06_13-51-32_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate83_annotated_minimized_2020-01-06_13-51-32_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate83_annotated_minimized_2020-01-06_13-51-32.cfg"}}}
06 Jan 2020 10:53:49,820 INFO : Sent POST request to https://api.clue.io/api/psp
06 Jan 2020 10:53:49,822 INFO : Checking status of job 5e13823d5beec6001388e35b
06 Jan 2020 10:53:49,944 INFO : Status: Waiting_To_Download
06 Jan 2020 10:54:09,944 INFO : Checking status of job 5e13823d5beec6001388e35b
06 Jan 2020 10:54:10,217 INFO : Status: Waiting_To_Download
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06 Jan 2020 11:00:15,244 INFO : Checking status of job 5e13823d5beec6001388e35b
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06 Jan 2020 11:03:18,085 INFO : Status: Waiting_To_Download
06 Jan 2020 11:03:21,335 INFO : Attempting to cancel job as requested by karen@broadinstitute.org.
06 Jan 2020 11:03:38,085 INFO : Checking status of job 5e13823d5beec6001388e35b
06 Jan 2020 11:03:38,365 INFO : Status: Waiting_To_Download
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06 Jan 2020 11:17:09,895 INFO : Checking status of job 5e13823d5beec6001388e35b
06 Jan 2020 11:17:10,211 INFO : Failed to complete task 'org.labkey.lincs.psp.LincsPspTask'